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The map label for this gene is ykgB [H]

Identifier: 30263334

GI number: 30263334

Start: 3147809

End: 3148870

Strand: Reverse

Name: ykgB [H]

Synonym: BA_3427

Alternate gene names: 30263334

Gene position: 3148870-3147809 (Counterclockwise)

Preceding gene: 30263335

Following gene: 30263332

Centisome position: 60.24

GC content: 35.5

Gene sequence:

>1062_bases
ATGAAGGATAATAAAGAGTTTATTGGATATGTTGGAACATACACGAAAGAAAATAGTGAAGGAATATATAAGTTTACGTT
AGACACGGAAGCAAAGAAAATTAGTAATGTAACACTTGCAGCCAAGTTGGATAACCCTACATATGTAACGATTAATCGAA
ATAATGAATATCTCTACTCTGTTGTTAAGGAAGGCGAATCTGGTGGTGTAGCTGCTTATTCAATTAATAGTAAAACTGGA
GAGCTAACAGAAGAAAACAGACAAGTAGTAGAAGGGGCTTCCCCTTGTCATGTGAGTGTTGATAGTAGAAATCATACGGT
AGTTACAGCAAATTACCATAAAGGAACGATTGAGTCTTTTGTAGTTAATGAAGAAGATGGAACTGTAAGTCCTGCGGCAT
CGATTATGGCACATGAAGGTTCAGGTCCGAATAAAGAAAGACAAGAAAAACCACATGCACATTACGCGGGATATACTCCT
GATGAAAAATATGTAGTGGGTGTTGATTTAGGGATAGATAAAATAATTACGTATGAAATAAAAGATAGTGTATTAACAGA
AGTGAATCGTTTATCTGTAAATCCAGGGAGTGGTCCGAGACATATTACTTTTCATCCAAATGGAAAGTATGCGTATGTGA
TGACGGAGCTTAGTTCAGAAGTTATTATGTTAACATATAATCCGGCAGAAGGACCATTTACAGAATTACAGTATATTTCT
ACCATTCCTAAAGCATTTGATGAAAATAATCAAGGAAGTGCGATTCATATTTCTTCTGATGGTCGCTTTGTATATGCAGG
TAATCGTGGTCATAATAGTATTGCTGTTTTCAGTGTAGATGAAAATTCAGGCAAGCTTACATTTGTTGCACATACATCTA
CAGAAGGAAATTGGCCAAGAGACTTTGTATTAGATCCTACTGAAAAGTTTCTTGTTGCTACAAATGAAAAATCACATAAT
CTTGTGCTATTTTCAAGAAGTGAATCTACAGGTGAGCTAACTCTTTTACAATCTGATGTTGCTGTGCCAGAGCCTGTTTG
TGTGAAGTTTTTGAACGTTTAA

Upstream 100 bases:

>100_bases
CGTATAAAGAGGTACTCCAATTTTTTTAGGATACTCTTTCAACATAAAATATGTTAAGAAGTATGATGAACGAAAAATAT
AGGGAGAGAGGGTTATGAAA

Downstream 100 bases:

>100_bases
TTTAAGTTTTCATTTCATATAGCAGTGTCGTTATTTGTCGGTAAGTCGATATCCTTTGTCGAAACGTCGATATATTAAAA
TAATCGTTGATATAATTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYLYSVVKEGESGGVAAYSINSKTG
ELTEENRQVVEGASPCHVSVDSRNHTVVTANYHKGTIESFVVNEEDGTVSPAASIMAHEGSGPNKERQEKPHAHYAGYTP
DEKYVVGVDLGIDKIITYEIKDSVLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIMLTYNPAEGPFTELQYIS
TIPKAFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDENSGKLTFVAHTSTEGNWPRDFVLDPTEKFLVATNEKSHN
LVLFSRSESTGELTLLQSDVAVPEPVCVKFLNV

Sequences:

>Translated_353_residues
MKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYLYSVVKEGESGGVAAYSINSKTG
ELTEENRQVVEGASPCHVSVDSRNHTVVTANYHKGTIESFVVNEEDGTVSPAASIMAHEGSGPNKERQEKPHAHYAGYTP
DEKYVVGVDLGIDKIITYEIKDSVLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIMLTYNPAEGPFTELQYIS
TIPKAFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDENSGKLTFVAHTSTEGNWPRDFVLDPTEKFLVATNEKSHN
LVLFSRSESTGELTLLQSDVAVPEPVCVKFLNV
>Mature_353_residues
MKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYLYSVVKEGESGGVAAYSINSKTG
ELTEENRQVVEGASPCHVSVDSRNHTVVTANYHKGTIESFVVNEEDGTVSPAASIMAHEGSGPNKERQEKPHAHYAGYTP
DEKYVVGVDLGIDKIITYEIKDSVLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIMLTYNPAEGPFTELQYIS
TIPKAFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDENSGKLTFVAHTSTEGNWPRDFVLDPTEKFLVATNEKSHN
LVLFSRSESTGELTLLQSDVAVPEPVCVKFLNV

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=325, Percent_Identity=30.1538461538462, Blast_Score=122, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 38817; Mature: 38817

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYLYS
CCCCCEEEEEEEEEECCCCCCEEEEEECCCCHHHCCEEEEEEECCCEEEEEECCCCEEEE
VVKEGESGGVAAYSINSKTGELTEENRQVVEGASPCHVSVDSRNHTVVTANYHKGTIESF
EEECCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCEEEEECCCCCEEEEEECCCCCEEEE
VVNEEDGTVSPAASIMAHEGSGPNKERQEKPHAHYAGYTPDEKYVVGVDLGIDKIITYEI
EEECCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE
KDSVLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIMLTYNPAEGPFTELQYIS
CHHHHHHHHEEEECCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHH
TIPKAFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDENSGKLTFVAHTSTEGNWPR
HHHHHHCCCCCCCEEEEECCCEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCC
DFVLDPTEKFLVATNEKSHNLVLFSRSESTGELTLLQSDVAVPEPVCVKFLNV
CEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHEEECC
>Mature Secondary Structure
MKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYLYS
CCCCCEEEEEEEEEECCCCCCEEEEEECCCCHHHCCEEEEEEECCCEEEEEECCCCEEEE
VVKEGESGGVAAYSINSKTGELTEENRQVVEGASPCHVSVDSRNHTVVTANYHKGTIESF
EEECCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCEEEEECCCCCEEEEEECCCCCEEEE
VVNEEDGTVSPAASIMAHEGSGPNKERQEKPHAHYAGYTPDEKYVVGVDLGIDKIITYEI
EEECCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEE
KDSVLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIMLTYNPAEGPFTELQYIS
CHHHHHHHHEEEECCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCCCHHHHHHHH
TIPKAFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDENSGKLTFVAHTSTEGNWPR
HHHHHHCCCCCCCEEEEECCCEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCCCC
DFVLDPTEKFLVATNEKSHNLVLFSRSESTGELTLLQSDVAVPEPVCVKFLNV
CEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]