Click here to switch to the map view.

The map label for this gene is yjdI [H]

Identifier: 30263284

GI number: 30263284

Start: 3106926

End: 3107402

Strand: Reverse

Name: yjdI [H]

Synonym: BA_3375

Alternate gene names: 30263284

Gene position: 3107402-3106926 (Counterclockwise)

Preceding gene: 30263288

Following gene: 30263283

Centisome position: 59.45

GC content: 35.85

Gene sequence:

>477_bases
ATGAAAAAAGATAAAACAAATGCGATGCGAATATTAGATAAAGAGAAAATTGAATATTCGATGATGTCATATAATCCAGA
CGATGGGAAAATTGATGGTGTATCAGTAGCCGAGAAAATTGGACGAGAAGTGAGAGAAGTATATAAAACGTTAATCGCTC
AAGGGAATAGTAAAAATTATCATGTGTTTATCATCCCGGTAGATGAGGAACTAAATTTAAAAGCTGCCGCAAAAGCAGTA
AGTGAAAAGAAGATTGAAATGATTCCTGTAAAAGATATTACAAAAGTGTCAGGATACATTCGCGGCGGCTGTTCACCAAT
CGGAATGAAGAAGTTATTTTCTACATGTATTGATGCGAGTGCTCAATCACTTGAAACGATGATTGTAAGCGGCGGGAAAA
TAGGTATACAAATTGAGCTGAAAGTGGATGACTTAGCGAAAGTAACGAGAGCACAGTTTGGTGAAATAACGAAATAA

Upstream 100 bases:

>100_bases
TATTTTTAGTTTTGAAATATACGTGAAGTTATGTAGGAGAAATGGAAAAGGGTGTATAATAAAACTTAATAATATGAAAT
AACCGTTTAAGGAGATCACT

Downstream 100 bases:

>100_bases
TGATACATGGGAAAAGAAGTTCTAGTTTTATTTAATTTAGATAAAGATTTATAGGATAGTTAGTCCATTATGGGGCTGAT
TATCCTTTTTATTTACATGC

Product: ybaK/ebsC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MKKDKTNAMRILDKEKIEYSMMSYNPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNYHVFIIPVDEELNLKAAAKAV
SEKKIEMIPVKDITKVSGYIRGGCSPIGMKKLFSTCIDASAQSLETMIVSGGKIGIQIELKVDDLAKVTRAQFGEITK

Sequences:

>Translated_158_residues
MKKDKTNAMRILDKEKIEYSMMSYNPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNYHVFIIPVDEELNLKAAAKAV
SEKKIEMIPVKDITKVSGYIRGGCSPIGMKKLFSTCIDASAQSLETMIVSGGKIGIQIELKVDDLAKVTRAQFGEITK
>Mature_158_residues
MKKDKTNAMRILDKEKIEYSMMSYNPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNYHVFIIPVDEELNLKAAAKAV
SEKKIEMIPVKDITKVSGYIRGGCSPIGMKKLFSTCIDASAQSLETMIVSGGKIGIQIELKVDDLAKVTRAQFGEITK

Specific function: May Be Involved In The Suppression Of Transcription Of Usha. [C]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786688, Length=156, Percent_Identity=41.025641025641, Blast_Score=112, Evalue=8e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17446; Mature: 17446

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKDKTNAMRILDKEKIEYSMMSYNPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNY
CCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
HVFIIPVDEELNLKAAAKAVSEKKIEMIPVKDITKVSGYIRGGCSPIGMKKLFSTCIDAS
EEEEEECCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
AQSLETMIVSGGKIGIQIELKVDDLAKVTRAQFGEITK
HHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKKDKTNAMRILDKEKIEYSMMSYNPDDGKIDGVSVAEKIGREVREVYKTLIAQGNSKNY
CCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
HVFIIPVDEELNLKAAAKAVSEKKIEMIPVKDITKVSGYIRGGCSPIGMKKLFSTCIDAS
EEEEEECCCCCCHHHHHHHHHHCCEEEECCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
AQSLETMIVSGGKIGIQIELKVDDLAKVTRAQFGEITK
HHHHHHHHCCCCEEEEEEEEEHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]