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The map label for this gene is rraA [C]

Identifier: 30263277

GI number: 30263277

Start: 3099159

End: 3099638

Strand: Reverse

Name: rraA [C]

Synonym: BA_3368

Alternate gene names: 30263277

Gene position: 3099638-3099159 (Counterclockwise)

Preceding gene: 30263279

Following gene: 30263276

Centisome position: 59.3

GC content: 38.12

Gene sequence:

>480_bases
ATGTGGAAAACTACGGATCTATGTGATGAGTTTGAAAATGAATTGCAAATATGTCGCCAACCTTTTCGGTCTTTTGGAAA
GAAAGAACAATTCCACGGGAAAATTGCAACGGTGAAAGTGAAGGATGATAATGTACTAGTGAAGGAAGGATTACAAACAT
TGCCGGAAGGAACGGTATTAGTTGTTGACGGGGGAGCCTCTACGAATTGTGCGTTACTTGGTGATAATTTGGCAGCTATT
GCGGAGGAAAGAAAGCTGGCAGGAATTATTGTGAATGGATATGTTCGTGATTCTAGTGAACTAAAGAATATAAATATAGG
TATTTTAGCGTTAGGAACAATGCCGAATAGAAGTGTTAAAGAAGGAAAAGGAGAACGAAATATTTCATTGCAATTTGGAC
AAGTAGAATGGAAGCCGGATGAATATGTGTATGTGGATGAAGATGGCGTCATTATTAGTGATAAGAGTTTGCATCGTTAA

Upstream 100 bases:

>100_bases
TCCTTTTTCCGCACATACAAATTATTGCAACATTAGACAGGGAAACGAAAATAATCCAAGAATATGTTAAATAGAAAATA
AAAGGAAAAGAGGGAAAAAG

Downstream 100 bases:

>100_bases
AGGTTAGTAAGTTACTATTCTTAGAAAATAAATCCGATAAAGCATGGACAAAATTCTTTGTCAATAGTAAAATAATACAG
AAATTTAAAATTAACAGAAT

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MWKTTDLCDEFENELQICRQPFRSFGKKEQFHGKIATVKVKDDNVLVKEGLQTLPEGTVLVVDGGASTNCALLGDNLAAI
AEERKLAGIIVNGYVRDSSELKNINIGILALGTMPNRSVKEGKGERNISLQFGQVEWKPDEYVYVDEDGVIISDKSLHR

Sequences:

>Translated_159_residues
MWKTTDLCDEFENELQICRQPFRSFGKKEQFHGKIATVKVKDDNVLVKEGLQTLPEGTVLVVDGGASTNCALLGDNLAAI
AEERKLAGIIVNGYVRDSSELKNINIGILALGTMPNRSVKEGKGERNISLQFGQVEWKPDEYVYVDEDGVIISDKSLHR
>Mature_159_residues
MWKTTDLCDEFENELQICRQPFRSFGKKEQFHGKIATVKVKDDNVLVKEGLQTLPEGTVLVVDGGASTNCALLGDNLAAI
AEERKLAGIIVNGYVRDSSELKNINIGILALGTMPNRSVKEGKGERNISLQFGQVEWKPDEYVYVDEDGVIISDKSLHR

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family

Homologues:

Organism=Escherichia coli, GI1790364, Length=156, Percent_Identity=34.6153846153846, Blast_Score=104, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRAAH_BACAN (Q81N49)

Other databases:

- EMBL:   AE016879
- EMBL:   AE017334
- EMBL:   AE017225
- RefSeq:   NP_845654.1
- RefSeq:   YP_020001.1
- RefSeq:   YP_029379.1
- ProteinModelPortal:   Q81N49
- SMR:   Q81N49
- EnsemblBacteria:   EBBACT00000010620
- EnsemblBacteria:   EBBACT00000015387
- EnsemblBacteria:   EBBACT00000022042
- GeneID:   1084707
- GeneID:   2818737
- GeneID:   2848422
- GenomeReviews:   AE016879_GR
- GenomeReviews:   AE017225_GR
- GenomeReviews:   AE017334_GR
- KEGG:   ban:BA_3368
- KEGG:   bar:GBAA_3368
- KEGG:   bat:BAS3122
- TIGR:   BA_3368
- TIGR:   GBAA_3368
- GeneTree:   EBGT00050000003624
- HOGENOM:   HBG668175
- OMA:   NCALLGD
- ProtClustDB:   PRK09372
- BioCyc:   BANT260799:BAS3122-MONOMER
- BioCyc:   BANT261594:GBAA3368-MONOMER
- InterPro:   IPR005493
- InterPro:   IPR010203
- Gene3D:   G3DSA:3.50.30.40
- TIGRFAMs:   TIGR01935

Pfam domain/function: PF03737 Methyltransf_6; SSF89562 RNaseE_inh/diMeMenaQ_MeTrfase

EC number: NA

Molecular weight: Translated: 17638; Mature: 17638

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKTTDLCDEFENELQICRQPFRSFGKKEQFHGKIATVKVKDDNVLVKEGLQTLPEGTVL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEHHHHHHHCCCCEEE
VVDGGASTNCALLGDNLAAIAEERKLAGIIVNGYVRDSSELKNINIGILALGTMPNRSVK
EEECCCCCCEEEECCCHHHHHHCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCHH
EGKGERNISLQFGQVEWKPDEYVYVDEDGVIISDKSLHR
CCCCCCEEEEEECEEEECCCCEEEECCCCEEECCCCCCC
>Mature Secondary Structure
MWKTTDLCDEFENELQICRQPFRSFGKKEQFHGKIATVKVKDDNVLVKEGLQTLPEGTVL
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCEEHHHHHHHCCCCEEE
VVDGGASTNCALLGDNLAAIAEERKLAGIIVNGYVRDSSELKNINIGILALGTMPNRSVK
EEECCCCCCEEEECCCHHHHHHCCCEEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCHH
EGKGERNISLQFGQVEWKPDEYVYVDEDGVIISDKSLHR
CCCCCCEEEEEECEEEECCCCEEEECCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629