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The map label for this gene is yvaF [H]

Identifier: 30263263

GI number: 30263263

Start: 3085409

End: 3085966

Strand: Reverse

Name: yvaF [H]

Synonym: BA_3354

Alternate gene names: 30263263

Gene position: 3085966-3085409 (Counterclockwise)

Preceding gene: 30263264

Following gene: 30263262

Centisome position: 59.04

GC content: 30.47

Gene sequence:

>558_bases
ATGAAACAAAGAATAGTAACAGAAACAATTCATCAAATTCAAACGAAGGGGTTTACATTTACAATTAGTGATTTAGCAAA
ACAATTAGCTGTCAGTAAGAGGACAATCTATGAGCACTTCTCTTCAAAAGATGAAATAGTAGATGAAGTTATTCGTAATG
TAATAGAAAGTATTCAAGAAAAGGAAAAAAATATCGCTGAAGATGATACGTTACAAACAGTTGAAAAAATAAGACTCATC
TTAATTTGCATTCCACAACAATTTACATTCATGGATGCACGTTTATTAGTAGAACTAAAAAAACATCATTATTACCAATG
GTTAAAATTAGATCAGTTTTTACGTGAAGGGTGGTCTACTGTAATTGGTTTAATAGAAGAGGGAATGAGAGAAGGAAGCA
TAAGAAAAATTCAAATTCCGTTTTTTATTGAAGTCTATTTGGGGGCACTGAATCGCATATATGATCCTATGTTTATTGAA
AAAAGTGATCATACATTAGGAAGTATGCTGGAATCTATTATGGATATGTTACTGTATGGCATTTCTAATTCGAAATAG

Upstream 100 bases:

>100_bases
AGAAAATTATAAAAATTAGTTGGATACATTGTGTTAAATATTGTAAAATGGAATGGTACCAAAAAAACTAAATTGGTACC
AAAGGTTCAGGGGGCGGATT

Downstream 100 bases:

>100_bases
AGGGTGGGAGAGTAGTGCAGTGGATTTATTTATGTTTAGCGATTTTATTTGAGGTAGCAGGTACAACTGCGATAAAACTA
TCTGATGGATTAACGAAACT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 185

Protein sequence:

>185_residues
MKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQEKEKNIAEDDTLQTVEKIRLI
LICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIE
KSDHTLGSMLESIMDMLLYGISNSK

Sequences:

>Translated_185_residues
MKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQEKEKNIAEDDTLQTVEKIRLI
LICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIE
KSDHTLGSMLESIMDMLLYGISNSK
>Mature_185_residues
MKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQEKEKNIAEDDTLQTVEKIRLI
LICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWSTVIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIE
KSDHTLGSMLESIMDMLLYGISNSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21719; Mature: 21719

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQE
CCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KEKNIAEDDTLQTVEKIRLILICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWST
HHHCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIEKSDHTLGSMLESIMDMLLYG
HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHH
ISNSK
CCCCC
>Mature Secondary Structure
MKQRIVTETIHQIQTKGFTFTISDLAKQLAVSKRTIYEHFSSKDEIVDEVIRNVIESIQE
CCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
KEKNIAEDDTLQTVEKIRLILICIPQQFTFMDARLLVELKKHHYYQWLKLDQFLREGWST
HHHCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGLIEEGMREGSIRKIQIPFFIEVYLGALNRIYDPMFIEKSDHTLGSMLESIMDMLLYG
HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHH
ISNSK
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]