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The map label for this gene is ydgJ [H]

Identifier: 30262995

GI number: 30262995

Start: 2804701

End: 2805129

Strand: Reverse

Name: ydgJ [H]

Synonym: BA_3041

Alternate gene names: 30262995

Gene position: 2805129-2804701 (Counterclockwise)

Preceding gene: 30262997

Following gene: 30262994

Centisome position: 53.66

GC content: 33.57

Gene sequence:

>429_bases
GTGACAAGTTCATGCTCAAAAGAAGCGATTATTTTATATAAATTACACTTTCTAAATAAAGAAGTAAGTTCGAAATTTGA
AGGGTGTACGGGTATGAGCCAGTCTCGATTAGAGCTTATACTTCAGTTATTTGAAGTAGGTGAAATTAGTCAAAAAGCAC
TTCAGCAAGAAGTGAACATTGATAATGCCGCGATAACGAGGCATTTAAAACAGCTAGAAGCAAACGGAATGATTGTAAGA
CGTAAAAATCCAGACGATAACAGAATTACGTTAGTTTCTCTTACTGAAGAGGGACGAAATAAAATTCAGGCGTTTCAAGA
GGAAAAAGAACGTTTTGCAGCATCGGCATTTAAAGGATTAAGTGAAGAAGAACGCGATAATCTTTTAAATATGTTAATTC
ATATTCAAGAAAACATAAAAGAACTTTAA

Upstream 100 bases:

>100_bases
ACAAAATGCTTGCATTCTAAATCGATATAGATTATATTAATTGACATATCAACTATTGATACATCAAATGTTTTTATTTT
GATTGTAAAGGAGGGTTAAT

Downstream 100 bases:

>100_bases
AAAAGGGAGAATACAACTATGACTAACTCAGTAAAAACAAATGATTTTAACGAAATTTTAACAGGACGTCGTTCGATTCG
TAAATACGACCCATCAGTGA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNIDNAAITRHLKQLEANGMIVR
RKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGLSEEERDNLLNMLIHIQENIKEL

Sequences:

>Translated_142_residues
MTSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNIDNAAITRHLKQLEANGMIVR
RKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGLSEEERDNLLNMLIHIQENIKEL
>Mature_141_residues
TSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNIDNAAITRHLKQLEANGMIVRR
KNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGLSEEERDNLLNMLIHIQENIKEL

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: COG1846

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 16265; Mature: 16134

Theoretical pI: Translated: 5.75; Mature: 5.75

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNI
CCCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCC
DNAAITRHLKQLEANGMIVRRKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGL
CHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCC
SEEERDNLLNMLIHIQENIKEL
CHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TSSCSKEAIILYKLHFLNKEVSSKFEGCTGMSQSRLELILQLFEVGEISQKALQQEVNI
CCCCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCC
DNAAITRHLKQLEANGMIVRRKNPDDNRITLVSLTEEGRNKIQAFQEEKERFAASAFKGL
CHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCC
SEEERDNLLNMLIHIQENIKEL
CHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]