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The map label for this gene is lsrD [H]

Identifier: 30262933

GI number: 30262933

Start: 2743963

End: 2744952

Strand: Reverse

Name: lsrD [H]

Synonym: BA_2976

Alternate gene names: 30262933

Gene position: 2744952-2743963 (Counterclockwise)

Preceding gene: 30262934

Following gene: 30262932

Centisome position: 52.51

GC content: 37.98

Gene sequence:

>990_bases
ATGAAGTATGTATACAGATGGGAAGGTGTTCTAATTGTATTGCTTCTTATAGAATTCATTCTCTTTAGTTTAATCAATAG
TGATTTCTTAAATATTAGTAATCTCCTTTTTAGTACAAATGATTTCCTATTTATCGCAATTGCTGCGATACCAATGACTT
TCGTTATAGTAACAGGAGGAATTGATGTATCGGTCGGCTCAATAATGGGTCTCACTTCGATCTTAATCGGTGTACTTTGG
ATGAACGGAATATCTATTTTGTTTGCTGTCATAATATCTCTAATAATTAGTTGTTTAGCAGGCGCTTTAAACGGATTTAT
TATAAAAATGACAGATGTAGAACCACTCGTCGTTACACTCGGCACGATGTTTTTATACGGAGGAATTGCACTCGTCATTT
CAGGAGGGGCAGGTGCTTCTGGGTATGAAGGGATAAGTGGTTTACCTGACGCATTTGTACAACTGGCAAGCGGTAGTTTT
ATAGGAATACCAAATTTATTATGGCTACTGATCGTATTAACAGTTTTATGTGCTGTATTATTTCACCGAACTATATACGG
ACGCCATGTAAAATTAACAGGTGCGAACGAAAATGCAGCAAAATACACCGGGATTATGACGAAGAAAGTAGTCATCATCG
CTTACATGCTTTCCGGGTTAGGAGGTGGATTAGGGGGGACTTTCTTAACTGCCTATTTCGGTTCCGCACGTGCTGATATG
GGAAGTGAAACAATTTTACCAATCATTACGGCAGTCGTATTAGGCGGGACACTTATTACAGGGGGAAAAGGAAGCATTAT
CGGTACTGTACTGGCGAGTATTTTCATTGGACTCATGCAGTATGGCTTGCAAATGACGGGTTTAACAAATGAACAATCCA
ACGTAGTAATTGGTATTATCCTTATTCTTTCAGTTATTATGAGACATTTCAAATTACATCAATTCACACTGGGGAAAAGA
AAGAATTTGCATAAGGGGGAAATGTCATGA

Upstream 100 bases:

>100_bases
CAGCATTTTGGAATAATGCTATTTCAGGTTTTTTATTATTACTTATCATCATACTGGATAGTGTTATGAAAAAGTGGAAG
GCAGAAAGGAGGATGAATCT

Downstream 100 bases:

>100_bases
AGAGAAAACTAGGGATTGTATTCATTGTATGTATTTGTTTAATCGGTTTAATCGCCTGTTCTAGTCAAACCGCAGATAAG
AAAAAAGCGGATGATGTGAA

Product: ribose ABC transporter, permease protein, putative

Products: NA

Alternate protein names: AI-2 import system permease protein lsrD [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGLTSILIGVLW
MNGISILFAVIISLIISCLAGALNGFIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSF
IGIPNLLWLLIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADM
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFTLGKR
KNLHKGEMS

Sequences:

>Translated_329_residues
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGLTSILIGVLW
MNGISILFAVIISLIISCLAGALNGFIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSF
IGIPNLLWLLIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADM
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFTLGKR
KNLHKGEMS
>Mature_329_residues
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGGIDVSVGSIMGLTSILIGVLW
MNGISILFAVIISLIISCLAGALNGFIIKMTDVEPLVVTLGTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSF
IGIPNLLWLLIVLTVLCAVLFHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADM
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGIILILSVIMRHFKLHQFTLGKR
KNLHKGEMS

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787794, Length=326, Percent_Identity=42.638036809816, Blast_Score=241, Evalue=6e-65,
Organism=Escherichia coli, GI1790191, Length=304, Percent_Identity=31.25, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788896, Length=310, Percent_Identity=30.6451612903226, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787793, Length=303, Percent_Identity=30.3630363036304, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1790524, Length=311, Percent_Identity=30.8681672025724, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI87082395, Length=280, Percent_Identity=31.7857142857143, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI145693152, Length=265, Percent_Identity=29.811320754717, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI145693214, Length=284, Percent_Identity=28.8732394366197, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788471, Length=277, Percent_Identity=29.9638989169675, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1789992, Length=125, Percent_Identity=30.4, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34907; Mature: 34907

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGG
CCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECC
IDVSVGSIMGLTSILIGVLWMNGISILFAVIISLIISCLAGALNGFIIKMTDVEPLVVTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHH
GTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLIVLTVLCAVL
HHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADM
HHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHCCC
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGII
CCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHH
LILSVIMRHFKLHQFTLGKRKNLHKGEMS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKYVYRWEGVLIVLLLIEFILFSLINSDFLNISNLLFSTNDFLFIAIAAIPMTFVIVTGG
CCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHHEEEECC
IDVSVGSIMGLTSILIGVLWMNGISILFAVIISLIISCLAGALNGFIIKMTDVEPLVVTL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHH
GTMFLYGGIALVISGGAGASGYEGISGLPDAFVQLASGSFIGIPNLLWLLIVLTVLCAVL
HHHHHHCCHHEEEECCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FHRTIYGRHVKLTGANENAAKYTGIMTKKVVIIAYMLSGLGGGLGGTFLTAYFGSARADM
HHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHCCC
GSETILPIITAVVLGGTLITGGKGSIIGTVLASIFIGLMQYGLQMTGLTNEQSNVVIGII
CCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHH
LILSVIMRHFKLHQFTLGKRKNLHKGEMS
HHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA