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The map label for this gene is yddQ [C]

Identifier: 30262279

GI number: 30262279

Start: 2113351

End: 2114370

Strand: Reverse

Name: yddQ [C]

Synonym: BA_2268

Alternate gene names: 30262279

Gene position: 2114370-2113351 (Counterclockwise)

Preceding gene: 30262280

Following gene: 30262273

Centisome position: 40.45

GC content: 33.33

Gene sequence:

>1020_bases
ATGAAATCTATTTGGAAATCAAAACGCTTTTTAATCGGCTTTACTTATTTATTCATACTTGTTTCAGCTAGTTTTATTTA
TAGTTGGTTCTTTAAAGATACCATCCCAAAAGCTCCCCAGTTACTTTACAATGACAATAACGAATTACTTGGAAAGGCTC
CCTTTCCACCATCATTAATACCGCCTTTTGGATCGGATCGTTTTGGAGAGTCTGTTTTCTTACAAATTATAGAAGGAGCA
AAGTTCACCATTTTATTAGCCGTGGTAATTAGCTTCTTTCGCATATTATTCGGAACATGTATAGGAATACTCTTAAGTTT
ATACGCTTCAAAATTCAAGAGATTTTTCCAGGCATGCTCAGAAGTTTTTTACTATATTCCTACTTTATTTATCGCATTTA
TACTCATCACACCTGTTAATATTGTAATCGTATCAAATGCTGATAGATTAGATCCAAATATTTCATTTGCGTTTTATCAA
GTACTCGTACTTATATTCGTCGCACTGCCTACACTTTCTTTATATATATCCTCAGAGGTTGATGAATTTATGAAACAAGA
TTACATTTTAAGTTCCCAATTGCTGGGAGCTAGCCGTTTTCATATTATCAAAAAACACTTACGAGTCTTGTTACTTGATC
GCTTATTTGTGTTATTTATGGAACATATTGTCCAAGCGCTCATACTCGTTATCCATTTAGCGTTGCTTGATATTATAATT
GGCGGGATCCAAATGCGGGAACTCTATGATGGAGCGCTCAAACCTGTTTCTCTATCTAATGATTGGGCTGGCCTTATTGG
ATTAAATCGTTATGAAATGAATCTTTCATGGTGGATTATTTTTTATTCTCTCGCTTCATTCTTTATTACGATTCTATTTA
TTAAGCTTATGACAATCGGGATTCAAGATGCACTGAAAGCAAGAGATTCGCAAACTGTAGCAATTCAATCTGTTCCAGAT
CAAAAGAAATTTGTTAAACATAAAGATTCTTTTTCTTTTGCAAATAAAGTAAACCTTTAA

Upstream 100 bases:

>100_bases
TTATCATACTTGTGATGATTATTTTACCGTTTTACGCCATTTTTCAAATCATCTCTTTCATGATGAATAGGTGGCAAAAG
CAATTGAAAGGAGCAGCTTT

Downstream 100 bases:

>100_bases
TCATCTCTCATAAATCAAGTATGAATTGGCATTGATATTAGTAGAATATAAAAAGATGATCCCTATTGAATACAGAGATC
ATCTTTTTTATACCGTCTAA

Product: hypothetical protein

Products: NA

Alternate protein names: ABC Transporter Permease Protein; Oligopeptide Transport System Permease Protein AppC; Oligopeptide Transport System Permease; Peptide ABC Transporter Permease; Oligopeptide Permease OppC; ABC Transporter; Dipeptide Transport System Permease; Peptide/Opine/Nickel Uptake Family ABC Transporter; ABC-Type Transport System Permease Protein; Oligopeptide Transport System Permease Protein-Like Protein; Peptide ABC Transporter Permease Protein; ABC Transporter Membrane Spanning Protein

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGESVFLQIIEGA
KFTILLAVVISFFRILFGTCIGILLSLYASKFKRFFQACSEVFYYIPTLFIAFILITPVNIVIVSNADRLDPNISFAFYQ
VLVLIFVALPTLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILVIHLALLDIII
GGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFITILFIKLMTIGIQDALKARDSQTVAIQSVPD
QKKFVKHKDSFSFANKVNL

Sequences:

>Translated_339_residues
MKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGESVFLQIIEGA
KFTILLAVVISFFRILFGTCIGILLSLYASKFKRFFQACSEVFYYIPTLFIAFILITPVNIVIVSNADRLDPNISFAFYQ
VLVLIFVALPTLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILVIHLALLDIII
GGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFITILFIKLMTIGIQDALKARDSQTVAIQSVPD
QKKFVKHKDSFSFANKVNL
>Mature_339_residues
MKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELLGKAPFPPSLIPPFGSDRFGESVFLQIIEGA
KFTILLAVVISFFRILFGTCIGILLSLYASKFKRFFQACSEVFYYIPTLFIAFILITPVNIVIVSNADRLDPNISFAFYQ
VLVLIFVALPTLSLYISSEVDEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILVIHLALLDIII
GGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFITILFIKLMTIGIQDALKARDSQTVAIQSVPD
QKKFVKHKDSFSFANKVNL

Specific function: Probably Part Of The Binding-Protein-Dependent Transport System Yddopqrs. Probably Responsible For The Translocation Of The Substrate Across The Membrane. [C]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787760, Length=278, Percent_Identity=22.6618705035971, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787054, Length=252, Percent_Identity=21.031746031746, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38797; Mature: 38797

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELLGKAPFPPSLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCC
PPFGSDRFGESVFLQIIEGAKFTILLAVVISFFRILFGTCIGILLSLYASKFKRFFQACS
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVFYYIPTLFIAFILITPVNIVIVSNADRLDPNISFAFYQVLVLIFVALPTLSLYISSEV
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILVIHLALLDIII
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFITILFIKLMTIG
CCHHHHHHHHCCCCCCCCCCCCHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
IQDALKARDSQTVAIQSVPDQKKFVKHKDSFSFANKVNL
HHHHHHCCCCCEEEEECCCCHHHHHHHCCCCCHHHCCCC
>Mature Secondary Structure
MKSIWKSKRFLIGFTYLFILVSASFIYSWFFKDTIPKAPQLLYNDNNELLGKAPFPPSLI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEECCCCCCCCCCCCCCCCC
PPFGSDRFGESVFLQIIEGAKFTILLAVVISFFRILFGTCIGILLSLYASKFKRFFQACS
CCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EVFYYIPTLFIAFILITPVNIVIVSNADRLDPNISFAFYQVLVLIFVALPTLSLYISSEV
HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DEFMKQDYILSSQLLGASRFHIIKKHLRVLLLDRLFVLFMEHIVQALILVIHLALLDIII
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GGIQMRELYDGALKPVSLSNDWAGLIGLNRYEMNLSWWIIFYSLASFFITILFIKLMTIG
CCHHHHHHHHCCCCCCCCCCCCHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
IQDALKARDSQTVAIQSVPDQKKFVKHKDSFSFANKVNL
HHHHHHCCCCCEEEEECCCCHHHHHHHCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA