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The map label for this gene is sigM [H]

Identifier: 30261223

GI number: 30261223

Start: 1090293

End: 1090778

Strand: Reverse

Name: sigM [H]

Synonym: BA_1113

Alternate gene names: 30261223

Gene position: 1090778-1090293 (Counterclockwise)

Preceding gene: 30261227

Following gene: 30261222

Centisome position: 20.87

GC content: 36.83

Gene sequence:

>486_bases
GTGAAACGTAAACAATCATTAGAAGAAATTTACTCAGAACATATGCAAGATTTATTTCGCTATCTTCTCTCCCTAACCGG
AGATTCCCATTTTGCTGAAGATCTCATGCAAGAAACATTTTACCGAATGCTCGTCCATATTGACTATTATAAAGGAGAAG
AAATTAGGCCGTGGTTATTTACGATTGCCTACAACGCCTTTATCGATTGGTATCGAAAAGAAAAAAGATATAAAACGACG
ACAATTACAGAATTCCATTTACCAAACGTGCCAAGTACAGAGCACTCTTATTTCATAAAACATGAGATTGCTAGTTGGTT
AGACCGTTTATCTTCTCTTCCGCTCGAGAGACGAAATGTTCTGTTACTACGAGATTACTACGGATTCTCTTATAAGGAAA
TAGCAGTGATGACTGGTCTCTCACTAGCAAAAGTGAAAATTGAATTACACCGTGGTCGAAAAGAAATGAAAAGCATAAAG
GAGTGA

Upstream 100 bases:

>100_bases
GAATCTTATCCAATTCTTGACGTTTTTTACTATAATTCCATAAAAAATTGTAACTTTTTTATATGTATTTCGTTGTTATG
TATGAAGGGAGGGAAATGTA

Downstream 100 bases:

>100_bases
TACGGATGGGTTGTACAGCATTTAAAAAACTATGGGAGAGATACGAAAACGGAACGCTCACGCATAATGAACAAGAACTG
TTAGAAAATCATATTGAGAC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKRYKTT
TITEFHLPNVPSTEHSYFIKHEIASWLDRLSSLPLERRNVLLLRDYYGFSYKEIAVMTGLSLAKVKIELHRGRKEMKSIK
E

Sequences:

>Translated_161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKRYKTT
TITEFHLPNVPSTEHSYFIKHEIASWLDRLSSLPLERRNVLLLRDYYGFSYKEIAVMTGLSLAKVKIELHRGRKEMKSIK
E
>Mature_161_residues
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLFTIAYNAFIDWYRKEKRYKTT
TITEFHLPNVPSTEHSYFIKHEIASWLDRLSSLPLERRNVLLLRDYYGFSYKEIAVMTGLSLAKVKIELHRGRKEMKSIK
E

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19544; Mature: 19544

Theoretical pI: Translated: 9.07; Mature: 9.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
TIAYNAFIDWYRKEKRYKTTTITEFHLPNVPSTEHSYFIKHEIASWLDRLSSLPLERRNV
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE
LLLRDYYGFSYKEIAVMTGLSLAKVKIELHRGRKEMKSIKE
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCHHHHHHHCC
>Mature Secondary Structure
MKRKQSLEEIYSEHMQDLFRYLLSLTGDSHFAEDLMQETFYRMLVHIDYYKGEEIRPWLF
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
TIAYNAFIDWYRKEKRYKTTTITEFHLPNVPSTEHSYFIKHEIASWLDRLSSLPLERRNV
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCE
LLLRDYYGFSYKEIAVMTGLSLAKVKIELHRGRKEMKSIKE
EEEECCCCCCHHHHHHHHCCHHHHHHHHHHHCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]