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The map label for this gene is yocH [H]

Identifier: 30260938

GI number: 30260938

Start: 811536

End: 812696

Strand: Reverse

Name: yocH [H]

Synonym: BA_0796

Alternate gene names: 30260938

Gene position: 812696-811536 (Counterclockwise)

Preceding gene: 30260939

Following gene: 30260930

Centisome position: 15.55

GC content: 41.0

Gene sequence:

>1161_bases
ATGAAAAAATTTATGGGTATAGCAACAGCAGCGGTTTTTGGTCTTGGGATTTTCACAACATCTGCTAAAGCAGAAACAAT
CGTAACGACTGATGTACTAAATGTACGAGAAAACCCAACTACTGAATCAAAAGTTGTAGGAAAATTATTAGATGGATATA
AAGTTAACGTTTTACATACAGAAAACGGATGGTCAAAAGTGAAATTGAATAGCGGTAAAGAAGCTTTCATTAGCGCTGAC
TACACAAAAGACACTTACTACGTAACAGCTAACGTATTAAACGTACGTGCTGGTGCAAACACAGACTCAGAGATTCTTGG
GAAATTGAAACAAGATGACGTAATCGAAACAACACACCAAGTTGAAAATGGTTGGATCCAATTTGAATATAACGGAAAAA
CAGCTTACGTTCACGTTCCTTACTTAACAGGTAAAGCTCCAGTTAAAGTTCAACCAGTAGTTAAAGCTGAAAAAACAACT
ACAGTTCAAGATACAGCTAAAGCCGTGGCAACAACTAAAGCTCGTGAAGTAGCTGAAACGCAAGCAAAAGCTAAAGCGGA
GGAAGCAACTAAAGCTCGCGAAGTAGCTGAAGCTCAAGCAGCGGCTAAAGCTCGTGAAGCAGCTAAGGCTCAAGAGGCAG
CTAAAGCTCAGGCAGAAGCTAAAGCTCAAGAAGCAGCTGAAGCTCAAGCAGCGGCTAAAGCTCAAGAGGCAGCTAAAGCT
CGTGAAGCAGCTAAAGCTCAGGCAGAAGCTAAAGCTCAAGAAGCAGCTGAAGCTCGTGAAGCGGCTAAAGCTCAAAAACC
AGCTACACAACAACCTGTTGCAAAAGAAACTGAAACAAGTGCACCATCATCTTCTCGTGAGTTACGCGTTGTAGCAACAG
CTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAAGTAAAATCAGCTTTAGGTCACAACTTAACAGCT
AATCCAAACATGAAACTAATCGCAGTTGATCCAAGTGTCATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGGAGT
AGCAATCGCTGGTGATACTGGTGGAGCTATTAAAGGAAACAAAATCGACGTTTTAATGCCAGACAAAGGTACATCAAGTA
ACTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTAG

Upstream 100 bases:

>100_bases
TGCCCCGTTACGAAAGCTTTGTAATTCTATGTTTTTCGCAAATAAGAAAATAATGGTTGCTATAATGAGGTCAACGAAAA
CAAATGCAATGGAGGCTATT

Downstream 100 bases:

>100_bases
TTCGTATAAAAAGAGTCAGTCTCATTGAGGCTGACTCTTTTTGCGCTCCTTCTAAAGAAAATATACTTCTATCTGAAATT
ATATCAACGATTTTTCAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MKKFMGIATAAVFGLGIFTTSAKAETIVTTDVLNVRENPTTESKVVGKLLDGYKVNVLHTENGWSKVKLNSGKEAFISAD
YTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTHQVENGWIQFEYNGKTAYVHVPYLTGKAPVKVQPVVKAEKTT
TVQDTAKAVATTKAREVAETQAKAKAEEATKAREVAEAQAAAKAREAAKAQEAAKAQAEAKAQEAAEAQAAAKAQEAAKA
REAAKAQAEAKAQEAAEAREAAKAQKPATQQPVAKETETSAPSSSRELRVVATAYTADPLENGYKAGDQVKSALGHNLTA
NPNMKLIAVDPSVIPLGSKVWVEGYGVAIAGDTGGAIKGNKIDVLMPDKGTSSNWGRKTVTVKVLN

Sequences:

>Translated_386_residues
MKKFMGIATAAVFGLGIFTTSAKAETIVTTDVLNVRENPTTESKVVGKLLDGYKVNVLHTENGWSKVKLNSGKEAFISAD
YTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTHQVENGWIQFEYNGKTAYVHVPYLTGKAPVKVQPVVKAEKTT
TVQDTAKAVATTKAREVAETQAKAKAEEATKAREVAEAQAAAKAREAAKAQEAAKAQAEAKAQEAAEAQAAAKAQEAAKA
REAAKAQAEAKAQEAAEAREAAKAQKPATQQPVAKETETSAPSSSRELRVVATAYTADPLENGYKAGDQVKSALGHNLTA
NPNMKLIAVDPSVIPLGSKVWVEGYGVAIAGDTGGAIKGNKIDVLMPDKGTSSNWGRKTVTVKVLN
>Mature_386_residues
MKKFMGIATAAVFGLGIFTTSAKAETIVTTDVLNVRENPTTESKVVGKLLDGYKVNVLHTENGWSKVKLNSGKEAFISAD
YTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTHQVENGWIQFEYNGKTAYVHVPYLTGKAPVKVQPVVKAEKTT
TVQDTAKAVATTKAREVAETQAKAKAEEATKAREVAEAQAAAKAREAAKAQEAAKAQAEAKAQEAAEAQAAAKAQEAAKA
REAAKAQAEAKAQEAAEAREAAKAQKPATQQPVAKETETSAPSSSRELRVVATAYTADPLENGYKAGDQVKSALGHNLTA
NPNMKLIAVDPSVIPLGSKVWVEGYGVAIAGDTGGAIKGNKIDVLMPDKGTSSNWGRKTVTVKVLN

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 40769; Mature: 40769

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFMGIATAAVFGLGIFTTSAKAETIVTTDVLNVRENPTTESKVVGKLLDGYKVNVLHT
CCHHHHHHHHHHHHHHHEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCEEEEEEEE
ENGWSKVKLNSGKEAFISADYTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTHQ
CCCCEEEEECCCCEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHH
VENGWIQFEYNGKTAYVHVPYLTGKAPVKVQPVVKAEKTTTVQDTAKAVATTKAREVAET
HCCCEEEEEECCEEEEEEEEEECCCCCEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHH
QAKAKAEEATKAREVAEAQAAAKAREAAKAQEAAKAQAEAKAQEAAEAQAAAKAQEAAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAAKAQAEAKAQEAAEAREAAKAQKPATQQPVAKETETSAPSSSRELRVVATAYTADPL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCH
ENGYKAGDQVKSALGHNLTANPNMKLIAVDPSVIPLGSKVWVEGYGVAIAGDTGGAIKGN
HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCEEEEEEEEEEEECCCCCCCCCC
KIDVLMPDKGTSSNWGRKTVTVKVLN
EEEEEECCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MKKFMGIATAAVFGLGIFTTSAKAETIVTTDVLNVRENPTTESKVVGKLLDGYKVNVLHT
CCHHHHHHHHHHHHHHHEECCCCCCEEEEEEEEECCCCCCHHHHHHHHHHCCEEEEEEEE
ENGWSKVKLNSGKEAFISADYTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTHQ
CCCCEEEEECCCCEEEEEECCCCCEEEEEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHH
VENGWIQFEYNGKTAYVHVPYLTGKAPVKVQPVVKAEKTTTVQDTAKAVATTKAREVAET
HCCCEEEEEECCEEEEEEEEEECCCCCEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHH
QAKAKAEEATKAREVAEAQAAAKAREAAKAQEAAKAQAEAKAQEAAEAQAAAKAQEAAKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
REAAKAQAEAKAQEAAEAREAAKAQKPATQQPVAKETETSAPSSSRELRVVATAYTADPL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCH
ENGYKAGDQVKSALGHNLTANPNMKLIAVDPSVIPLGSKVWVEGYGVAIAGDTGGAIKGN
HHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCEEEEEEEEEEEECCCCCCCCCC
KIDVLMPDKGTSSNWGRKTVTVKVLN
EEEEEECCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]