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The map label for this gene is yxkH [H]

Identifier: 30260501

GI number: 30260501

Start: 339513

End: 340616

Strand: Reverse

Name: yxkH [H]

Synonym: BA_0331

Alternate gene names: 30260501

Gene position: 340616-339513 (Counterclockwise)

Preceding gene: 30260502

Following gene: 30260500

Centisome position: 6.52

GC content: 34.78

Gene sequence:

>1104_bases
ATGAAAAAGTATACATATATCGCTTTACTTTCTTCTGCTATTCTCGTAGGTTGTAACACTAGTAGCGCTAGTGATAAACA
AATACAAGAAACAACGGCGAAACAAGCAGTTGAACAAAAAAAAGCGAAAGCAGTTGAACTTCCTTTAACGCAAGGAGTTA
TTACATGGGATCCGTATGAATATAACGCACAAAATACCACGCTTTACACAAAAGATTTAAGAGATTCGTTTAAAGAAGTA
CGTTATAACATTTGGCGTACTGCTGATGGCCCTGAAAGCAAACAAACTTTCACTTCACAAGAAAAAGATCGTGATTTTGC
CCTCCCACTTCACCTAAAAACATTCCATTTAAAACGTGGCGAATTTCAAATTGAAACAGTAGGAATTAAAGAAGATAATA
CTGAAACAAATCTAGTAACATCTAAAATTACATTCCAGCAACATGTACCCGTTTTAATGTACCATGCAATTGAAAAATTT
CCTGGGCCAAGTGATGGAGATTATGGCTTATACGTACCGCCTGAACAATTCGAAAAACATATGCAATATTTGAAAGATAA
CGGTTATACGATGCTTACGTTTGAACGTTGGAATGATATAAACCGTGTAAATAAACCTATTTTCATAACAATGGATGATG
GTCGAAAAAATAATATGAACGCTCTTCATATTTTACAAAAATTAAAGGATGATACATTCCAGCCTGCAGCTACTGAATTC
CTTACTGCAAATGAGATAGACAAACCAAATCGTCTATCAACAGATGATATAAAGCAAATGATGGATTCAGGCATTTTTTC
TATTCAATCTCATACTGCTAATCATACGATGATGGCTCACTCCAATAATTATGATGAGGAATTACGTGGTTCAAAAGAGA
AAATTGAAGCTCTTACTGGTAAAAAGGTCATCGCTCTCGCCTATCCAGTAGGTTCTTATAATGATCCAGCTGTTGAAGAA
ACGAAAAAATATTATGAGTTCGCAGTAACTACTGATCACGGTAATCATATTACAAAAGGGATGCCGAACGAACAGTACTT
AATTAAACGCCATTTTGTAGGGCCTAATACATCGATGGAAAAATTCATATCTCTTATAAAGTAA

Upstream 100 bases:

>100_bases
CAAATTTTTAGAATCGAAAATTTGGATTCGTGTCACTTATAAGAACGATTGTTTCATAATATAAGTGATGATAATTAAAT
CACAATAGAAGGATGATAGA

Downstream 100 bases:

>100_bases
ACTTTACTAAAAAAACGGTAGAAATGGCTCTATTAAAAACTATCTTATTACTAAAATGACATGATGAACAAGGGTATATC
CCCACCTCTCTTACAGCGGT

Product: polysaccharide deacetylase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 367; Mature: 367

Protein sequence:

>367_residues
MKKYTYIALLSSAILVGCNTSSASDKQIQETTAKQAVEQKKAKAVELPLTQGVITWDPYEYNAQNTTLYTKDLRDSFKEV
RYNIWRTADGPESKQTFTSQEKDRDFALPLHLKTFHLKRGEFQIETVGIKEDNTETNLVTSKITFQQHVPVLMYHAIEKF
PGPSDGDYGLYVPPEQFEKHMQYLKDNGYTMLTFERWNDINRVNKPIFITMDDGRKNNMNALHILQKLKDDTFQPAATEF
LTANEIDKPNRLSTDDIKQMMDSGIFSIQSHTANHTMMAHSNNYDEELRGSKEKIEALTGKKVIALAYPVGSYNDPAVEE
TKKYYEFAVTTDHGNHITKGMPNEQYLIKRHFVGPNTSMEKFISLIK

Sequences:

>Translated_367_residues
MKKYTYIALLSSAILVGCNTSSASDKQIQETTAKQAVEQKKAKAVELPLTQGVITWDPYEYNAQNTTLYTKDLRDSFKEV
RYNIWRTADGPESKQTFTSQEKDRDFALPLHLKTFHLKRGEFQIETVGIKEDNTETNLVTSKITFQQHVPVLMYHAIEKF
PGPSDGDYGLYVPPEQFEKHMQYLKDNGYTMLTFERWNDINRVNKPIFITMDDGRKNNMNALHILQKLKDDTFQPAATEF
LTANEIDKPNRLSTDDIKQMMDSGIFSIQSHTANHTMMAHSNNYDEELRGSKEKIEALTGKKVIALAYPVGSYNDPAVEE
TKKYYEFAVTTDHGNHITKGMPNEQYLIKRHFVGPNTSMEKFISLIK
>Mature_367_residues
MKKYTYIALLSSAILVGCNTSSASDKQIQETTAKQAVEQKKAKAVELPLTQGVITWDPYEYNAQNTTLYTKDLRDSFKEV
RYNIWRTADGPESKQTFTSQEKDRDFALPLHLKTFHLKRGEFQIETVGIKEDNTETNLVTSKITFQQHVPVLMYHAIEKF
PGPSDGDYGLYVPPEQFEKHMQYLKDNGYTMLTFERWNDINRVNKPIFITMDDGRKNNMNALHILQKLKDDTFQPAATEF
LTANEIDKPNRLSTDDIKQMMDSGIFSIQSHTANHTMMAHSNNYDEELRGSKEKIEALTGKKVIALAYPVGSYNDPAVEE
TKKYYEFAVTTDHGNHITKGMPNEQYLIKRHFVGPNTSMEKFISLIK

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 42135; Mature: 42135

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYTYIALLSSAILVGCNTSSASDKQIQETTAKQAVEQKKAKAVELPLTQGVITWDPYE
CCCEEHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEECCCCCCEEEECCEE
YNAQNTTLYTKDLRDSFKEVRYNIWRTADGPESKQTFTSQEKDRDFALPLHLKTFHLKRG
ECCCCCEEEHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCEEEEEEEEEEEEECC
EFQIETVGIKEDNTETNLVTSKITFQQHVPVLMYHAIEKFPGPSDGDYGLYVPPEQFEKH
CEEEEEEECCCCCCCCEEEEEEEEHHHCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHH
MQYLKDNGYTMLTFERWNDINRVNKPIFITMDDGRKNNMNALHILQKLKDDTFQPAATEF
HHHHHCCCCEEEEECCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHH
LTANEIDKPNRLSTDDIKQMMDSGIFSIQSHTANHTMMAHSNNYDEELRGSKEKIEALTG
EECCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCHHHCCCHHHHHHHCC
KKVIALAYPVGSYNDPAVEETKKYYEFAVTTDHGNHITKGMPNEQYLIKRHFVGPNTSME
CEEEEEEECCCCCCCCHHHHHHHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHH
KFISLIK
HHHHHHC
>Mature Secondary Structure
MKKYTYIALLSSAILVGCNTSSASDKQIQETTAKQAVEQKKAKAVELPLTQGVITWDPYE
CCCEEHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEECCCCCCEEEECCEE
YNAQNTTLYTKDLRDSFKEVRYNIWRTADGPESKQTFTSQEKDRDFALPLHLKTFHLKRG
ECCCCCEEEHHHHHHHHHHHHHHHEECCCCCCHHHHHCCCCCCCCEEEEEEEEEEEEECC
EFQIETVGIKEDNTETNLVTSKITFQQHVPVLMYHAIEKFPGPSDGDYGLYVPPEQFEKH
CEEEEEEECCCCCCCCEEEEEEEEHHHCCHHHHHHHHHHCCCCCCCCCEEECCHHHHHHH
MQYLKDNGYTMLTFERWNDINRVNKPIFITMDDGRKNNMNALHILQKLKDDTFQPAATEF
HHHHHCCCCEEEEECCCCCHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCCHHHHH
LTANEIDKPNRLSTDDIKQMMDSGIFSIQSHTANHTMMAHSNNYDEELRGSKEKIEALTG
EECCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCEEEECCCCCCHHHCCCHHHHHHHCC
KKVIALAYPVGSYNDPAVEETKKYYEFAVTTDHGNHITKGMPNEQYLIKRHFVGPNTSME
CEEEEEEECCCCCCCCHHHHHHHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHH
KFISLIK
HHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]