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The map label for this gene is pdaB [H]

Identifier: 30260340

GI number: 30260340

Start: 144110

End: 144874

Strand: Reverse

Name: pdaB [H]

Synonym: BA_0150

Alternate gene names: 30260340

Gene position: 144874-144110 (Counterclockwise)

Preceding gene: 30260355

Following gene: 30260338

Centisome position: 2.77

GC content: 36.08

Gene sequence:

>765_bases
ATGTTTTTCTTTTTTATTACGAGTAAAAGAAACTTTAAACACATTAGCTTAATAGTGATACTTTCCTTATTTACCGCATG
GCTACTCTTTTTGAAAACATATTCACACGAGTCTGCTTTTTCAACTGCTACAGGGCCTAAAGTTATTTACAAAGGCGACA
CCTCTAAAAAACAAGTTGCATTCACGTTTGATATTAGTTGGGGAGACAAAAAAGCAATTCCAATCCTTGATACACTTAAA
GAAAGAGATATTAAGAATGCAACCTTCTTCCTTTCTGCTGCATGGGCAGAAAGACACCCTGATGTTGTTGAACGCATCAT
AAAAGATGGACATGAAATCGGTAGTATGGGTTATAATTACACATCCTACACTTCTCTAGAGACAAATGAAATAAGAAGAG
ATCTTCTGCGAGCACAAGATGTTTTTACAAAACTCGGTGTGAAACAAATCAAACTATTACGTCCACCTAGTGGAGACTTT
AACAAAGCAACACTTAAAATAGCAGAATCACTCGGATACACTGTCGTTCATTGGAGTAATAACTCAAACGATTGGAAAAA
CCCTGGCGTAAACAAGATCGTTTCCACCGTCTCTAATAATTTAAAAGGTGGAGATATCGTCTTATTACATGCATCCGATT
CTGCCCTTCAAACAAATAAAGCTTTGCCACTGCTTCTACAGAAATTAAAGAGTGACGGCTATGAGCAAATATCCGTATCA
CAACTTATTTCCAACACAAGTACGAAAAGTAAAGATGTTCAATAA

Upstream 100 bases:

>100_bases
TCCATTATATCCACTACTTACGATATTAATCCCTTGTTCTCTTTTTTATATTTACAGCATATATGTAACTGAAAAGGATT
GGACAAAGGGGCGTAATATT

Downstream 100 bases:

>100_bases
TTTTTTACACATAAAAAGCTCCATTACCTTTCATTCAGGTAATGGAGCTTTTTTCATCCCGATATTTTCATACATAAAAC
TATCCTGCGTAAAAACGCTC

Product: polysaccharide deacetylase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTSKKQVAFTFDISWGDKKAIPILDTLK
ERDIKNATFFLSAAWAERHPDVVERIIKDGHEIGSMGYNYTSYTSLETNEIRRDLLRAQDVFTKLGVKQIKLLRPPSGDF
NKATLKIAESLGYTVVHWSNNSNDWKNPGVNKIVSTVSNNLKGGDIVLLHASDSALQTNKALPLLLQKLKSDGYEQISVS
QLISNTSTKSKDVQ

Sequences:

>Translated_254_residues
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTSKKQVAFTFDISWGDKKAIPILDTLK
ERDIKNATFFLSAAWAERHPDVVERIIKDGHEIGSMGYNYTSYTSLETNEIRRDLLRAQDVFTKLGVKQIKLLRPPSGDF
NKATLKIAESLGYTVVHWSNNSNDWKNPGVNKIVSTVSNNLKGGDIVLLHASDSALQTNKALPLLLQKLKSDGYEQISVS
QLISNTSTKSKDVQ
>Mature_254_residues
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTSKKQVAFTFDISWGDKKAIPILDTLK
ERDIKNATFFLSAAWAERHPDVVERIIKDGHEIGSMGYNYTSYTSLETNEIRRDLLRAQDVFTKLGVKQIKLLRPPSGDF
NKATLKIAESLGYTVVHWSNNSNDWKNPGVNKIVSTVSNNLKGGDIVLLHASDSALQTNKALPLLLQKLKSDGYEQISVS
QLISNTSTKSKDVQ

Specific function: Necessary to maintain spores after the late stage of sporulation. Might be involved in cortex formation [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Forespore. Note=Produced in the mother cell compartment and transported into the forespore [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509
- InterPro:   IPR014132 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 28567; Mature: 28567

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTSKKQVA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECCCCCCEEE
FTFDISWGDKKAIPILDTLKERDIKNATFFLSAAWAERHPDVVERIIKDGHEIGSMGYNY
EEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEEHHHHCCHHHHHHHHHCCHHHCCCCCCC
TSYTSLETNEIRRDLLRAQDVFTKLGVKQIKLLRPPSGDFNKATLKIAESLGYTVVHWSN
CEECCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCHHHHHHHHHCCEEEEEECC
NSNDWKNPGVNKIVSTVSNNLKGGDIVLLHASDSALQTNKALPLLLQKLKSDGYEQISVS
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHCCCCCHHHHH
QLISNTSTKSKDVQ
HHHHCCCCCCCCCC
>Mature Secondary Structure
MFFFFITSKRNFKHISLIVILSLFTAWLLFLKTYSHESAFSTATGPKVIYKGDTSKKQVA
CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCEEEEECCCCCCEEE
FTFDISWGDKKAIPILDTLKERDIKNATFFLSAAWAERHPDVVERIIKDGHEIGSMGYNY
EEEEECCCCCCCCCHHHHHHHCCCCCCEEEEEEHHHHCCHHHHHHHHHCCHHHCCCCCCC
TSYTSLETNEIRRDLLRAQDVFTKLGVKQIKLLRPPSGDFNKATLKIAESLGYTVVHWSN
CEECCCCHHHHHHHHHHHHHHHHHHCHHHEEEECCCCCCCCHHHHHHHHHCCEEEEEECC
NSNDWKNPGVNKIVSTVSNNLKGGDIVLLHASDSALQTNKALPLLLQKLKSDGYEQISVS
CCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCCCHHHCCCCHHHHHHHHHCCCCCHHHHH
QLISNTSTKSKDVQ
HHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969501; 9384377; 8576055 [H]