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The map label for this gene is gerD [H]

Identifier: 30260338

GI number: 30260338

Start: 142637

End: 143254

Strand: Reverse

Name: gerD [H]

Synonym: BA_0148

Alternate gene names: 30260338

Gene position: 143254-142637 (Counterclockwise)

Preceding gene: 30260340

Following gene: 30260227

Centisome position: 2.74

GC content: 35.44

Gene sequence:

>618_bases
ATGAAACGGATGCTGCTCGTTTTGACTTCTTCTTTTCTATTTCTTGTACTTGTAGCATGTGCACAAGAAAAAGAAGCAAA
GTCCGAACTTGATTATGATCAAACGAAGAAAATGATTGTTGATATTTTAAAAACCGATCAAGGTAAGAAAGCCATTCAAG
ATGTGTTAACTGATGAAAAAATGAAACAGGCACTCATACTAGATGAAACAGTAGTAAAGAAAACGATTGAAGATGCAATG
GTATCCGACAAAGGGCAACAATTCTGGGAAAAGCTCTTTAAAGACCCTGAGTTCTCATCGAAATTTGCTAAAAGTATGGG
AAAAGAACAAACAGCCTTAATGAAAACATTACTAAAAGACCCTGAATACCAAGCAGGTGTTATAGAAATTATGAAAAACC
CTGAAGTAGAAAAAATGATGTTACAAACGATGAAGAGCAAAGAATATCGTCAATATTTACAACAAGTACTAACAGAAACT
GCTGAAAGCCCACTCTTCCAAGCTAAGATGATTGATATTATTAGTAAAGGTGTCCAAAAAGCCGAAAAAAGTGGTTCTGA
TAAAAAGGAAGCAGGCGGTGAAGGTGGTTCTCAAGAAGGTAAAAAGGAACAGCAGTAA

Upstream 100 bases:

>100_bases
TATCAATGACAATTTCAAAAAGCTAGCCATGTTCATGTATAAATTCCTTAAAGATATTTATATTAAAAAGAGAGAACTGT
GCTGAAAGGAGTTCCAACTT

Downstream 100 bases:

>100_bases
AAATAATAACACTAATAATGAGTGGACAATATATGTATCGTCCACTCATTATTATTTTATTTTTGCGCAAAAGCTGTTTT
ATCAATTACTGTTTCAGCTA

Product: spore germination protein GerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MKRMLLVLTSSFLFLVLVACAQEKEAKSELDYDQTKKMIVDILKTDQGKKAIQDVLTDEKMKQALILDETVVKKTIEDAM
VSDKGQQFWEKLFKDPEFSSKFAKSMGKEQTALMKTLLKDPEYQAGVIEIMKNPEVEKMMLQTMKSKEYRQYLQQVLTET
AESPLFQAKMIDIISKGVQKAEKSGSDKKEAGGEGGSQEGKKEQQ

Sequences:

>Translated_205_residues
MKRMLLVLTSSFLFLVLVACAQEKEAKSELDYDQTKKMIVDILKTDQGKKAIQDVLTDEKMKQALILDETVVKKTIEDAM
VSDKGQQFWEKLFKDPEFSSKFAKSMGKEQTALMKTLLKDPEYQAGVIEIMKNPEVEKMMLQTMKSKEYRQYLQQVLTET
AESPLFQAKMIDIISKGVQKAEKSGSDKKEAGGEGGSQEGKKEQQ
>Mature_205_residues
MKRMLLVLTSSFLFLVLVACAQEKEAKSELDYDQTKKMIVDILKTDQGKKAIQDVLTDEKMKQALILDETVVKKTIEDAM
VSDKGQQFWEKLFKDPEFSSKFAKSMGKEQTALMKTLLKDPEYQAGVIEIMKNPEVEKMMLQTMKSKEYRQYLQQVLTET
AESPLFQAKMIDIISKGVQKAEKSGSDKKEAGGEGGSQEGKKEQQ

Specific function: May be involved in fructose recognition during germination [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23262; Mature: 23262

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRMLLVLTSSFLFLVLVACAQEKEAKSELDYDQTKKMIVDILKTDQGKKAIQDVLTDEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MKQALILDETVVKKTIEDAMVSDKGQQFWEKLFKDPEFSSKFAKSMGKEQTALMKTLLKD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHCC
PEYQAGVIEIMKNPEVEKMMLQTMKSKEYRQYLQQVLTETAESPLFQAKMIDIISKGVQK
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
AEKSGSDKKEAGGEGGSQEGKKEQQ
HHHCCCCHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKRMLLVLTSSFLFLVLVACAQEKEAKSELDYDQTKKMIVDILKTDQGKKAIQDVLTDEK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
MKQALILDETVVKKTIEDAMVSDKGQQFWEKLFKDPEFSSKFAKSMGKEQTALMKTLLKD
HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHCC
PEYQAGVIEIMKNPEVEKMMLQTMKSKEYRQYLQQVLTETAESPLFQAKMIDIISKGVQK
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
AEKSGSDKKEAGGEGGSQEGKKEQQ
HHHCCCCHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2517635; 8969501; 9384377; 8576055; 7559346 [H]