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The map label for this gene is abrB [H]

Identifier: 30260227

GI number: 30260227

Start: 40823

End: 41107

Strand: Reverse

Name: abrB [H]

Synonym: BA_0034

Alternate gene names: 30260227

Gene position: 41107-40823 (Counterclockwise)

Preceding gene: 30260338

Following gene: 30260210

Centisome position: 0.79

GC content: 33.68

Gene sequence:

>285_bases
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCACTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATTTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Upstream 100 bases:

>100_bases
ATGATTGGTATCATATGTCCATAGGGTATTTTGTCGAAAAATGACGAATCTAAAAATAGACTCGAAACTTATAAACTATT
TCTTTAGGAGGAAAAGAATT

Downstream 100 bases:

>100_bases
GCTTCTCAATTATGAGAAGCTTATTTTTTATCGACATGATAGATTTGATATACATCGCGTTTCGACAAATCTCGATCTTT
AGCGACTGTTTTTATTGCCT

Product: transition state transcriptional regulatory protein AbrB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 94; Mature: 94

Protein sequence:

>94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLFLAEGKIILSKEGAE
QILNELQDYIETAK

Sequences:

>Translated_94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLFLAEGKIILSKEGAE
QILNELQDYIETAK
>Mature_94_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLFLAEGKIILSKEGAE
QILNELQDYIETAK

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10550; Mature: 10550

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEE
SDGNLFLAEGKIILSKEGAEQILNELQDYIETAK
CCCCEEEECCEEEEECCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEE
SDGNLFLAEGKIILSKEGAEQILNELQDYIETAK
CCCCEEEECCEEEEECCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]