| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is nodB [H]
Identifier: 77748781
GI number: 77748781
Start: 5170199
End: 5172901
Strand: Reverse
Name: nodB [H]
Synonym: XAC4371
Alternate gene names: 77748781
Gene position: 5172901-5170199 (Counterclockwise)
Preceding gene: 21245084
Following gene: 77748780
Centisome position: 99.95
GC content: 63.71
Gene sequence:
>2703_bases GTGACCACATCGCCGTTGCATCGCCTGTTGCTGTGCGCAAGTTGCATGGGAGTGCTGGCGCTGGCCGGCTGCGGCAGGCA TGACGCGAGCGATGCTGCCGCCGCTGCCAAGCCCGCTGCTGCAACGAGCGCTGGCACGCAGGCGGGCACGGCCGGGGACG CCACGCCCGCCTTGATCGCGCAACTGCGCCAACAACTGGACCGGCACCGCCGCATCATCGTGCTGCTGGCCGATGAGGAC AAACAAAGGCCACGCGATCGCGCCACCTCCAGCAGCGTGGGCCAGCAGTTGTTTCATGAAAACCTGGAGCAGCGCGAGCG CATTGCCGCATCCTTCGACACCGTGCTGATCTCCCAGGACGCGCGCCGGTTCGCGACGATTGCCGCGGTGCTGGACGAGG TGGAATCTGCGCCGGATCTGTTCGATGCCGACCGCCTGGCATTTGCCGAGGTGCTGCGCGATCTACATGCGCGCATCGGC CGCGACTCTGCATTGCCGGCGGTGAAACTGCATCAGCGCATCGGCGAGGATCTGGAGGCGCTGGACGAGATCGAGCGTAG CTACAACAAGGAGCTGACGCAGATCTTCAGTCGTTTCGACCGCAGCCGCGCCATCGTGCCCAAGCGCGAGAAATGGGACG ACTATGTGGCGCATCTGCGCACGCTGTACACGCGCGAGAACATCCTGCGCGACCATGGCGTGGTAGAGCCGTACCCGTTC GCCGCGCGCGACAGCGACAGCGAAGTGTTCGGCCGCGACTTGCCGCCCAAGACGGTGGTGCTTACCTTCGACGATGGCCC GCACAGGGCCTACACCGAAGAGATCGTGGCAATTCTCAAGCGCTACGATGTGCCAGGCGTGTTCTTCGAAGTGGGGCGCA ATCTCGGCAGTTTGGATGCCCAGGGCAAAGCGAAACTTGCGCCGCTGTCAAAGATCAGCCACACGCTGATGGAAGAAGGC TACGCCGTGGGGAACCACAGCCTGACGCACGCACAGTTGTCCAAAACCACCGGCGATGCACTACGCAGCCAGGTACTGGA TGCCGACGCCTTGCTGCGTGCGGTGGACGACAAACGTGCGCCGCTGTTCCGGTTTCCGTATGGCGCACGTAATGCGGAAG GCTTGCAGTTGCTCGGCGAGGCCGGCCTGAAATCGATCATGTGGAACATCGACTCGTTGGACTGGGCCGACCCGGTGCCG GAATCCATCGTGCAACGCGTGCTCGATCAAGTGAACAAGGAGCAGCGCGGCATCGTGCTGTTCCATGACATCCACGACCG CGCAGTGAAAGCGCTGCCGCAGATTCTGGATCGTCTCATCGCCGACGGTTACCAGTTCGCCGGCTGGAATGGCCGCGAGT TTTCGGTGGCGCACGCGCCCAGCGCGTTAGCCGATGCCACGGTGACCACCGGCTATGCGAAATCGTGGGCGATCGTGATC GGTATCGACGACTACGCGCAGTGGCCCAGGCTCGAATATGCCGCCAACGATGCGCAGGCGATTGCCAGTACCCTGACCGG GCCGTTGGGATTTCCATCCTCGCAAGTGATTGTGCTCAAGAACGGGCAGGCCACGCGCAACAACATCCTGGCCGCATTCC ACGACCGCCTCGGCGAAGGCCGTGCACAAACCAACGACCGCGTGTTCGTGTTCTTTGCCGGGCATGGCGCCACACGACGG CTGGCTTCCGGTCGCGATCTTGGCTACATCATTCCGGTCGACTCGGACCCACAGCATCTGGCCAGCGATGCGATCGCAAT GAGCGATTTGCAGAACATCGCCGAAAGCCTGCAGGCCAAGCACGTCTTGTTCGTGATGGATGCGTGTTACAGCGGGCTGG GGTTGACGCGTGGCGGGCCGACGTCCGGCGCGTATCTGCGCGAGAACGCGCGGCGTATCGCGCGCCAGATGCTCACCGCC GGCGGCGCCGATCAACAGGTGGCCGATAGCGGGCCCAATGGGCATTCGGTGTTCACCTGGGTGCTGTTGCAGGCATTGGC CGGCAAGGGCGACCTCAATGGCGACGGCTTGATCACCGGGACCGAACTGGCCGCGTACGTGGCGCCTGCGGTGTCGGCAG TCTCGGCGCAGACGCCGGCATTCGGCAGCCTGCCCGGTTCGCAAGGCGGCGAATTCGTGTTCCAGGTTCCCAGCGGCGAT GAGTTCCTCACTGCAGAGACCGCGCAGCTGTCGGCCGATGCGATTGCGCTCAACGGACGCGTGGACGCAGCGCGCCCTGC GTCGGCCGCAGCCGGTGCGACAGTGGCTGCGGCGCCGGTGACGGTGAAGACGCTGCAAGGCGGACAAGCTACGCTGGTGT TGCCCGCCGCAGTGAAGAGCAGCGATCGCCAACGCGCACAACTGGCCAACGAACGCGGCCTGCAGTTGTACAAGGAAAAG CGCTATGTCGATGCGGCCGAGCAATTTGCCGAAGCACTAAAGCTACGCCCGGATTTCGCGCTGGCGGCCAACAACCTGGG CTTTGTGTATTACCGTCAGGGGCGCTTTGCCGAATCGGCGCGTTGGCTGGAAAATACCTTGAAGATCGATCCCTCGCGCG CAGTGGCCTATCTCAATCTCGGCGATGCATATGCAAAGGCAGGCGATCGCGACAAGGCGCGCAAGGCCTATTCCACGTAC CTGGAATTGCAGCCGCAAGGCAGTGGTGCGGAGCAGGCGCGTACGCAGCTGCAATCGTTGTGA
Upstream 100 bases:
>100_bases GCCAACGCCAAGTAAGTTCAAGAAGGCCCGCCGCAAGGCGGGCTTTCTGCATGTCAGCCCGCATTTATTGCCTGTTGTCT CTTTCGCCAAGGACGCCGTC
Downstream 100 bases:
>100_bases CTGAAGTAGCGACACGACATGGCGTGCAGATGCCAGACAGCGCGATTGTCGCAACGGTAGGCGACTCAAAAGTGCCCGCA AACATGTGGCTCGGCACTGC
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: Nodulation protein B [H]
Number of amino acids: Translated: 900; Mature: 899
Protein sequence:
>900_residues MTTSPLHRLLLCASCMGVLALAGCGRHDASDAAAAAKPAAATSAGTQAGTAGDATPALIAQLRQQLDRHRRIIVLLADED KQRPRDRATSSSVGQQLFHENLEQRERIAASFDTVLISQDARRFATIAAVLDEVESAPDLFDADRLAFAEVLRDLHARIG RDSALPAVKLHQRIGEDLEALDEIERSYNKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTRENILRDHGVVEPYPF AARDSDSEVFGRDLPPKTVVLTFDDGPHRAYTEEIVAILKRYDVPGVFFEVGRNLGSLDAQGKAKLAPLSKISHTLMEEG YAVGNHSLTHAQLSKTTGDALRSQVLDADALLRAVDDKRAPLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVP ESIVQRVLDQVNKEQRGIVLFHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVAHAPSALADATVTTGYAKSWAIVI GIDDYAQWPRLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGQATRNNILAAFHDRLGEGRAQTNDRVFVFFAGHGATRR LASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPTSGAYLRENARRIARQMLTA GGADQQVADSGPNGHSVFTWVLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGD EFLTAETAQLSADAIALNGRVDAARPASAAAGATVAAAPVTVKTLQGGQATLVLPAAVKSSDRQRAQLANERGLQLYKEK RYVDAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESARWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYSTY LELQPQGSGAEQARTQLQSL
Sequences:
>Translated_900_residues MTTSPLHRLLLCASCMGVLALAGCGRHDASDAAAAAKPAAATSAGTQAGTAGDATPALIAQLRQQLDRHRRIIVLLADED KQRPRDRATSSSVGQQLFHENLEQRERIAASFDTVLISQDARRFATIAAVLDEVESAPDLFDADRLAFAEVLRDLHARIG RDSALPAVKLHQRIGEDLEALDEIERSYNKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTRENILRDHGVVEPYPF AARDSDSEVFGRDLPPKTVVLTFDDGPHRAYTEEIVAILKRYDVPGVFFEVGRNLGSLDAQGKAKLAPLSKISHTLMEEG YAVGNHSLTHAQLSKTTGDALRSQVLDADALLRAVDDKRAPLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVP ESIVQRVLDQVNKEQRGIVLFHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVAHAPSALADATVTTGYAKSWAIVI GIDDYAQWPRLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGQATRNNILAAFHDRLGEGRAQTNDRVFVFFAGHGATRR LASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPTSGAYLRENARRIARQMLTA GGADQQVADSGPNGHSVFTWVLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGD EFLTAETAQLSADAIALNGRVDAARPASAAAGATVAAAPVTVKTLQGGQATLVLPAAVKSSDRQRAQLANERGLQLYKEK RYVDAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESARWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYSTY LELQPQGSGAEQARTQLQSL >Mature_899_residues TTSPLHRLLLCASCMGVLALAGCGRHDASDAAAAAKPAAATSAGTQAGTAGDATPALIAQLRQQLDRHRRIIVLLADEDK QRPRDRATSSSVGQQLFHENLEQRERIAASFDTVLISQDARRFATIAAVLDEVESAPDLFDADRLAFAEVLRDLHARIGR DSALPAVKLHQRIGEDLEALDEIERSYNKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTRENILRDHGVVEPYPFA ARDSDSEVFGRDLPPKTVVLTFDDGPHRAYTEEIVAILKRYDVPGVFFEVGRNLGSLDAQGKAKLAPLSKISHTLMEEGY AVGNHSLTHAQLSKTTGDALRSQVLDADALLRAVDDKRAPLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVPE SIVQRVLDQVNKEQRGIVLFHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVAHAPSALADATVTTGYAKSWAIVIG IDDYAQWPRLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGQATRNNILAAFHDRLGEGRAQTNDRVFVFFAGHGATRRL ASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAKHVLFVMDACYSGLGLTRGGPTSGAYLRENARRIARQMLTAG GADQQVADSGPNGHSVFTWVLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGDE FLTAETAQLSADAIALNGRVDAARPASAAAGATVAAAPVTVKTLQGGQATLVLPAAVKSSDRQRAQLANERGLQLYKEKR YVDAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESARWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYSTYL ELQPQGSGAEQARTQLQSL
Specific function: Is involved in generating a small heat-stable compound (Nod), an acylated oligomer of N-acetylglucosamine, that stimulates mitosis in various plant protoplasts [H]
COG id: COG4249
COG function: function code R; Uncharacterized protein containing caspase domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the polysaccharide deacetylase family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6323339, Length=186, Percent_Identity=25.8064516129032, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011330 - InterPro: IPR002509 [H]
Pfam domain/function: PF01522 Polysacc_deac_1 [H]
EC number: NA
Molecular weight: Translated: 97331; Mature: 97200
Theoretical pI: Translated: 6.36; Mature: 6.36
Prosite motif: PS00018 EF_HAND_1 ; PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTSPLHRLLLCASCMGVLALAGCGRHDASDAAAAAKPAAATSAGTQAGTAGDATPALIA CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHCCCCCCCCCCCCCCHHHHH QLRQQLDRHRRIIVLLADEDKQRPRDRATSSSVGQQLFHENLEQRERIAASFDTVLISQD HHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH ARRFATIAAVLDEVESAPDLFDADRLAFAEVLRDLHARIGRDSALPAVKLHQRIGEDLEA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH LDEIERSYNKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTRENILRDHGVVEPYPF HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AARDSDSEVFGRDLPPKTVVLTFDDGPHRAYTEEIVAILKRYDVPGVFFEVGRNLGSLDA CCCCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC QGKAKLAPLSKISHTLMEEGYAVGNHSLTHAQLSKTTGDALRSQVLDADALLRAVDDKRA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVPESIVQRVLDQVNKEQRGIVL CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE FHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVAHAPSALADATVTTGYAKSWAIVI EECHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCHHHCCHHCCCCCCCEEEEE GIDDYAQWPRLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGQATRNNILAAFHDRLGEG EECCHHHCCCCHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC RAQTNDRVFVFFAGHGATRRLASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAK CCCCCCEEEEEEECCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH HVLFVMDACYSGLGLTRGGPTSGAYLRENARRIARQMLTAGGADQQVADSGPNGHSVFTW HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHH VLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGD HHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC EFLTAETAQLSADAIALNGRVDAARPASAAAGATVAAAPVTVKTLQGGQATLVLPAAVKS CEEEEHHHHHCCCEEEECCCCCCCCCCCHHCCCEEEECCEEEEEECCCCEEEEEEHHHCC SDRQRAQLANERGLQLYKEKRYVDAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHH RWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYSTYLELQPQGSGAEQARTQLQSL HHHHHHHEECCCCEEEEEECCHHHHCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHCC >Mature Secondary Structure TTSPLHRLLLCASCMGVLALAGCGRHDASDAAAAAKPAAATSAGTQAGTAGDATPALIA CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCHHCCCCCCCCCCCCCCHHHHH QLRQQLDRHRRIIVLLADEDKQRPRDRATSSSVGQQLFHENLEQRERIAASFDTVLISQD HHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHH ARRFATIAAVLDEVESAPDLFDADRLAFAEVLRDLHARIGRDSALPAVKLHQRIGEDLEA HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHH LDEIERSYNKELTQIFSRFDRSRAIVPKREKWDDYVAHLRTLYTRENILRDHGVVEPYPF HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AARDSDSEVFGRDLPPKTVVLTFDDGPHRAYTEEIVAILKRYDVPGVFFEVGRNLGSLDA CCCCCCCHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCC QGKAKLAPLSKISHTLMEEGYAVGNHSLTHAQLSKTTGDALRSQVLDADALLRAVDDKRA CCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PLFRFPYGARNAEGLQLLGEAGLKSIMWNIDSLDWADPVPESIVQRVLDQVNKEQRGIVL CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE FHDIHDRAVKALPQILDRLIADGYQFAGWNGREFSVAHAPSALADATVTTGYAKSWAIVI EECHHHHHHHHHHHHHHHHHHCCCEECCCCCCEEEECCCCCHHHCCHHCCCCCCCEEEEE GIDDYAQWPRLEYAANDAQAIASTLTGPLGFPSSQVIVLKNGQATRNNILAAFHDRLGEG EECCHHHCCCCHHCCCHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCC RAQTNDRVFVFFAGHGATRRLASGRDLGYIIPVDSDPQHLASDAIAMSDLQNIAESLQAK CCCCCCEEEEEEECCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH HVLFVMDACYSGLGLTRGGPTSGAYLRENARRIARQMLTAGGADQQVADSGPNGHSVFTW HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHH VLLQALAGKGDLNGDGLITGTELAAYVAPAVSAVSAQTPAFGSLPGSQGGEFVFQVPSGD HHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCC EFLTAETAQLSADAIALNGRVDAARPASAAAGATVAAAPVTVKTLQGGQATLVLPAAVKS CEEEEHHHHHCCCEEEECCCCCCCCCCCHHCCCEEEECCEEEEEECCCCEEEEEEHHHCC SDRQRAQLANERGLQLYKEKRYVDAAEQFAEALKLRPDFALAANNLGFVYYRQGRFAESA CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHH RWLENTLKIDPSRAVAYLNLGDAYAKAGDRDKARKAYSTYLELQPQGSGAEQARTQLQSL HHHHHHHEECCCCEEEEEECCHHHHCCCCHHHHHHHHHHHEEECCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11214968; 8850088 [H]