Click here to switch to the map view.

The map label for this gene is ykgA [C]

Identifier: 77748633

GI number: 77748633

Start: 2535718

End: 2536191

Strand: Reverse

Name: ykgA [C]

Synonym: XAC2166

Alternate gene names: 77748633

Gene position: 2536191-2535718 (Counterclockwise)

Preceding gene: 21242906

Following gene: 21242900

Centisome position: 49.0

GC content: 63.29

Gene sequence:

>474_bases
ATGGCACCTCTGATTGCCGTTGCTTGCCCCGATACGCGTGCTGCAGGGCGCATGCACATACAGGCATCGCGTGTGCGCGC
TGTTGCGCGCGCAATGCAGTACATCGACACGCATCTGTACGAACCTGTCAGCGTGGCGCATCTTGCGCAAGCGGCCTGCA
TGAGCCGCTTCCATTTCGCACGCGTGTTCCGCGATGCGGTCGGCGCCAGTCCAATGGAGTACCTGCGTCTTCGTCGGCTC
GAACGTGCCCAGGCGATGTTGCGCGAGGGCGGCCACACCATCAGCCAGATCGCGACCGATCTGTGCTTCTTCGATCAAAG
CCACTTCGTTCGCAGCTTTCGCAACGCCACCGGTTGCACGCCGGCACGTTTCGCCGCGCAGATGGCGATGGAGCCGTGCG
GCGCTGCCCTCATGCCCTCGTCGCAGCGGCGCGGCGGTGAATCGGTTTCACTTTCCATGGAGCAACCTGCATGA

Upstream 100 bases:

>100_bases
AAGCACTCCCCCGAAAGAGGGAACGATTCGCCTCACCATCAGGGGTAGGGCAGCAAAGCCGTCCCCGGCACCATACGGTC
ATTCCCCCCGGAGACGCCCC

Downstream 100 bases:

>100_bases
CCACTGCAACTGCCGTACCCGGCACATCCTTGCTATCGCCCGGCGATCACACCCTGATTCTGATCGACCATCAATCGCAG
ATGGCGTTCGCCACGCACAC

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; AraC/XylS Family Transcriptional Regulator; AraC Family Transcription Regulator; Transcriptional Regulator With PAS/PAC Sensors AraC Family; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; AraC Type Helix-Turn-Helix- Domain-Containing Protein; Transcription Regulator; L-Rhamnose Operon Transcriptional Activator; Transcriptional Regulator AraC-Type; PAS Sensor Protein; Regulator; Arac-Family Transcriptional Regulator; Transcriptional Regulator AraC/XylS Family; Proline Utilization Regulator; Helix-Turn-Helix- Domain Containing Protein; Regulatory Protein; Transcriptional Activator RamA; AraC/XylS Family Transcription Factor; HTH-Type Transcriptional Regulator ChbR; Two Component Transcriptional Regulator Arac Family; L-Rhamnose Operon Transcriptional Activator RhaR; Helix-Turn-Helix AraC Type; AraC-Type Trancriptional Regulator; Transcriptional Regulator Protein AraC Family; AraC Family Regulatory Helix-Turn-Helix; AraC Family Transcription Regulator Protein; Two Component AraC Family Transcriptional Regulator; Xyls/AraC-Type Transcriptional Activator

Number of amino acids: Translated: 157; Mature: 156

Protein sequence:

>157_residues
MAPLIAVACPDTRAAGRMHIQASRVRAVARAMQYIDTHLYEPVSVAHLAQAACMSRFHFARVFRDAVGASPMEYLRLRRL
ERAQAMLREGGHTISQIATDLCFFDQSHFVRSFRNATGCTPARFAAQMAMEPCGAALMPSSQRRGGESVSLSMEQPA

Sequences:

>Translated_157_residues
MAPLIAVACPDTRAAGRMHIQASRVRAVARAMQYIDTHLYEPVSVAHLAQAACMSRFHFARVFRDAVGASPMEYLRLRRL
ERAQAMLREGGHTISQIATDLCFFDQSHFVRSFRNATGCTPARFAAQMAMEPCGAALMPSSQRRGGESVSLSMEQPA
>Mature_156_residues
APLIAVACPDTRAAGRMHIQASRVRAVARAMQYIDTHLYEPVSVAHLAQAACMSRFHFARVFRDAVGASPMEYLRLRRLE
RAQAMLREGGHTISQIATDLCFFDQSHFVRSFRNATGCTPARFAAQMAMEPCGAALMPSSQRRGGESVSLSMEQPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17287; Mature: 17156

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
9.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPLIAVACPDTRAAGRMHIQASRVRAVARAMQYIDTHLYEPVSVAHLAQAACMSRFHFA
CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RVFRDAVGASPMEYLRLRRLERAQAMLREGGHTISQIATDLCFFDQSHFVRSFRNATGCT
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PARFAAQMAMEPCGAALMPSSQRRGGESVSLSMEQPA
HHHHHHHHHHHHCCCCCCCCHHHCCCCCEEECCCCCC
>Mature Secondary Structure 
APLIAVACPDTRAAGRMHIQASRVRAVARAMQYIDTHLYEPVSVAHLAQAACMSRFHFA
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RVFRDAVGASPMEYLRLRRLERAQAMLREGGHTISQIATDLCFFDQSHFVRSFRNATGCT
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PARFAAQMAMEPCGAALMPSSQRRGGESVSLSMEQPA
HHHHHHHHHHHHCCCCCCCCHHHCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA