| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is tsr [H]
Identifier: 77748616
GI number: 77748616
Start: 2197827
End: 2200082
Strand: Reverse
Name: tsr [H]
Synonym: XAC1891
Alternate gene names: 77748616
Gene position: 2200082-2197827 (Counterclockwise)
Preceding gene: 21242636
Following gene: 21242634
Centisome position: 42.51
GC content: 64.54
Gene sequence:
>2256_bases ATGATTGCTCTTCTTCAACGCTACAACGTCGGCAAGCGCCTGGGCTTCGCCTTCGGCACGCTGATCCTGCTGTCCTGCGC CCTGGTCGTGGCTGGCCTGTACACGCTGGCGCAGGCGCGCCAGACCCTTGACACGCTCACCAACCGCAACATGGTGATCG TCCAGCGGTTGCAGGAAATGAACAACGCGGTGTCGGTGATTGCCGTGCAGCTACGCAACATCGTGTTGCCGACCAGCGAT GCGGAGAATCGTCGCTTCGCTGCGATCATCGAAGACCAGCGCAGCATCTACAAGGATGCACGCGAGAAGCTCTACACCTT CTCGGCAACGCCTGCCGCCCAGGCGCTGCGTGAGAGGATCGATGCCAACAACAAGGCCGCCCGCGCGCTCAACCAGCAGG TGATCGACCTGGGTCTTGCCGGCAAGGCGGACCAGGCCCTGCCTTTGCTGTTGCAACGTGCCGCACCCGCCACGCAGGCA TGGCAGGACACGCTGCTGGAATATTCGGCGCTGCAGCGCCAACGCGCCCAGGAGGCCAATGCGCTGGCCACCACGGCGAT GGCCCGCGGTCGTGCCATGTTGATTGGTGGCGGCCTGGCGGTGGTGCTGATCAGCAGCGTGCTCGCCTGGTTGATCACGC GCAGCCTGGTGGTTCCGCTGACACGCGCCACGCGCGCCGCCGAAGCCATTGCCCAAGGCAAACTGGACAACGACGTCAGC GCGAACTTCAACGACGAGACCGGTCGCCTGTTGCATGCCATGAACGACATGCAGGGCCAGCTGCGCAATCTGATTGCCGC ACAGCTGGGCATGGCCAAGCGCCATGAAGAAGGCCAGATCAGCTTCCGCATGGATGCCGGCGCATTCCCGGGCGATTTCG GCCGCATGGCCCATGACACCAACGAGCTGGTGGCCGCGCACATCAAGGTCAAGATGCAGACCATCCACCTGATCGAGCGT TATGCCATCGGCGACCTGTCCGAAGACATGCAGCAGTTGCCCGGCGAGAAGGCGGCCATCACCGCGGCAATGAACCAGGT CAAGCACAACCTGTCGACCATGAACACCGAGATCAAGCAGCTGGCGCAGGCTGCGGCCAATGGCGACTTCACCGCGCGCG GCGATGCCGAGCAGTTCCAGTTCGATTTCCGCATCATGGTGGAAAGCCTCAACACCTTGATGGCCACCGCCGACGGCAAC CTGCAATCGCTCTCGGCCTTGTTGCAGTCGATCGCTGCCGGCGACCTCACCGCGCGCATGAGCGGCCAATACCGGGGCGT GTTCGCGCAGATGCGCGACGATGCCAATGCCACCGCCGAACAACTGGCCAGCATCGTCGGCCGCATCCAGATCGCGGCCG ATGCGATCGGTCTGGCCTCGGGCGAAATCGCCTCCGGTAATCAGGATCTGTCGCAGCGCACCGAACAGCAGGCCGCCAAC CTGGAAGAAACCGCGGCCTCGATGGAAGAGCTCACCTCCACCGTCAAGCAGAACGCCGAACACGCCAGCCAGGCCAACCA GCTCGCCATTGGCGCCGCTGCGGTCGCCTCGCAAGGCGGCGACGTGGTGGCGAAGGTGGTCACCACCATGTCCGACATCC AGGGCTCGTCCAAGAAGATCGCCGAGATCATCAGCGTCATCGACGGCATCGCGTTCCAGACCAATATCCTGGCCTTGAAC GCGGCAGTGGAAGCGGCGCGTGCCGGCGAACAGGGCCGTGGTTTTGCGGTGGTCGCGTCTGAAGTCCGCACGCTGGCGCA GCGTTCGGCCGGTGCCGCCAAGGAGATCAAGCACCTGATCGACGACTCGGTCGAAAAGGTCACGCAAGGCGCAACCCTGG TCGATCAGGCCGGCACCACCATGGCCGAGATCGTCGCCAGCGTGCAGCGCGTCACCAACATCATGGGCGAGATTTCCTCG GCCTCGCAGGAGCAGTACGCGGGTATCGAACAGGTCAACCAGACCGTCACCCACATGGACGAAGCCACCCAGCAGAACGC CGCGCTGGTGGAAGAAGCCACTGCCGCCGCCCGCTCGATGGAAGAGCAGGCAGGTCATCTGGCCGAAGCGGTGTCGGTGT TCAAGCTGGACGACTCGGCTGCGCAGGCGCCGCAGAGCGCACGCGTACGCCCGATCACCTCGCGCCCGGTTGCAGTGAAA AGCGCCGCCAGGCCGGTAGCGCGCGCAGCAGCGAGCGCCTCACGGCCAGCCACATCCCAGGCCGCGCTGGCCGACGGTAA CTGGCAAGAGTTCTGA
Upstream 100 bases:
>100_bases GGTTCGACGCACGCCCGCTTCGGCGCCACCAGCGTACCCAGTACGCCTCCCCGCCCAGCGCATTGCCTCTTTCCTGCCCA TCGCTCTCGAGATCCCAACC
Downstream 100 bases:
>100_bases TTCACCGCTGTCACCCACAACGCCCCGGCATTGCCGGGGCGTTGTGCATTTAGGCCAGGCACCGACGCTGGTCCTCGCGC GTACGATGCGGCAGCACGCC
Product: chemotaxis protein
Products: NA
Alternate protein names: Citrate chemoreceptor protein [H]
Number of amino acids: Translated: 751; Mature: 751
Protein sequence:
>751_residues MIALLQRYNVGKRLGFAFGTLILLSCALVVAGLYTLAQARQTLDTLTNRNMVIVQRLQEMNNAVSVIAVQLRNIVLPTSD AENRRFAAIIEDQRSIYKDAREKLYTFSATPAAQALRERIDANNKAARALNQQVIDLGLAGKADQALPLLLQRAAPATQA WQDTLLEYSALQRQRAQEANALATTAMARGRAMLIGGGLAVVLISSVLAWLITRSLVVPLTRATRAAEAIAQGKLDNDVS ANFNDETGRLLHAMNDMQGQLRNLIAAQLGMAKRHEEGQISFRMDAGAFPGDFGRMAHDTNELVAAHIKVKMQTIHLIER YAIGDLSEDMQQLPGEKAAITAAMNQVKHNLSTMNTEIKQLAQAAANGDFTARGDAEQFQFDFRIMVESLNTLMATADGN LQSLSALLQSIAAGDLTARMSGQYRGVFAQMRDDANATAEQLASIVGRIQIAADAIGLASGEIASGNQDLSQRTEQQAAN LEETAASMEELTSTVKQNAEHASQANQLAIGAAAVASQGGDVVAKVVTTMSDIQGSSKKIAEIISVIDGIAFQTNILALN AAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVEKVTQGATLVDQAGTTMAEIVASVQRVTNIMGEISS ASQEQYAGIEQVNQTVTHMDEATQQNAALVEEATAAARSMEEQAGHLAEAVSVFKLDDSAAQAPQSARVRPITSRPVAVK SAARPVARAAASASRPATSQAALADGNWQEF
Sequences:
>Translated_751_residues MIALLQRYNVGKRLGFAFGTLILLSCALVVAGLYTLAQARQTLDTLTNRNMVIVQRLQEMNNAVSVIAVQLRNIVLPTSD AENRRFAAIIEDQRSIYKDAREKLYTFSATPAAQALRERIDANNKAARALNQQVIDLGLAGKADQALPLLLQRAAPATQA WQDTLLEYSALQRQRAQEANALATTAMARGRAMLIGGGLAVVLISSVLAWLITRSLVVPLTRATRAAEAIAQGKLDNDVS ANFNDETGRLLHAMNDMQGQLRNLIAAQLGMAKRHEEGQISFRMDAGAFPGDFGRMAHDTNELVAAHIKVKMQTIHLIER YAIGDLSEDMQQLPGEKAAITAAMNQVKHNLSTMNTEIKQLAQAAANGDFTARGDAEQFQFDFRIMVESLNTLMATADGN LQSLSALLQSIAAGDLTARMSGQYRGVFAQMRDDANATAEQLASIVGRIQIAADAIGLASGEIASGNQDLSQRTEQQAAN LEETAASMEELTSTVKQNAEHASQANQLAIGAAAVASQGGDVVAKVVTTMSDIQGSSKKIAEIISVIDGIAFQTNILALN AAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVEKVTQGATLVDQAGTTMAEIVASVQRVTNIMGEISS ASQEQYAGIEQVNQTVTHMDEATQQNAALVEEATAAARSMEEQAGHLAEAVSVFKLDDSAAQAPQSARVRPITSRPVAVK SAARPVARAAASASRPATSQAALADGNWQEF >Mature_751_residues MIALLQRYNVGKRLGFAFGTLILLSCALVVAGLYTLAQARQTLDTLTNRNMVIVQRLQEMNNAVSVIAVQLRNIVLPTSD AENRRFAAIIEDQRSIYKDAREKLYTFSATPAAQALRERIDANNKAARALNQQVIDLGLAGKADQALPLLLQRAAPATQA WQDTLLEYSALQRQRAQEANALATTAMARGRAMLIGGGLAVVLISSVLAWLITRSLVVPLTRATRAAEAIAQGKLDNDVS ANFNDETGRLLHAMNDMQGQLRNLIAAQLGMAKRHEEGQISFRMDAGAFPGDFGRMAHDTNELVAAHIKVKMQTIHLIER YAIGDLSEDMQQLPGEKAAITAAMNQVKHNLSTMNTEIKQLAQAAANGDFTARGDAEQFQFDFRIMVESLNTLMATADGN LQSLSALLQSIAAGDLTARMSGQYRGVFAQMRDDANATAEQLASIVGRIQIAADAIGLASGEIASGNQDLSQRTEQQAAN LEETAASMEELTSTVKQNAEHASQANQLAIGAAAVASQGGDVVAKVVTTMSDIQGSSKKIAEIISVIDGIAFQTNILALN AAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLIDDSVEKVTQGATLVDQAGTTMAEIVASVQRVTNIMGEISS ASQEQYAGIEQVNQTVTHMDEATQQNAALVEEATAAARSMEEQAGHLAEAVSVFKLDDSAAQAPQSARVRPITSRPVAVK SAARPVARAAASASRPATSQAALADGNWQEF
Specific function: Acts as a receptor for citrate and mediates taxis away from phenol. Also mediates an attractant response to metal-citrate complexes [H]
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788195, Length=353, Percent_Identity=53.5410764872521, Blast_Score=294, Evalue=1e-80, Organism=Escherichia coli, GI2367378, Length=316, Percent_Identity=59.8101265822785, Blast_Score=293, Evalue=2e-80, Organism=Escherichia coli, GI1788194, Length=315, Percent_Identity=54.2857142857143, Blast_Score=281, Evalue=8e-77, Organism=Escherichia coli, GI1787690, Length=313, Percent_Identity=53.6741214057508, Blast_Score=281, Evalue=9e-77, Organism=Escherichia coli, GI1789453, Length=235, Percent_Identity=47.2340425531915, Blast_Score=200, Evalue=2e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR003122 - InterPro: IPR004091 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 79932; Mature: 79932
Theoretical pI: Translated: 5.45; Mature: 5.45
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALLQRYNVGKRLGFAFGTLILLSCALVVAGLYTLAQARQTLDTLTNRNMVIVQRLQEM CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH NNAVSVIAVQLRNIVLPTSDAENRRFAAIIEDQRSIYKDAREKLYTFSATPAAQALRERI HHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHH DANNKAARALNQQVIDLGLAGKADQALPLLLQRAAPATQAWQDTLLEYSALQRQRAQEAN CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH ALATTAMARGRAMLIGGGLAVVLISSVLAWLITRSLVVPLTRATRAAEAIAQGKLDNDVS HHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC ANFNDETGRLLHAMNDMQGQLRNLIAAQLGMAKRHEEGQISFRMDAGAFPGDFGRMAHDT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCH NELVAAHIKVKMQTIHLIERYAIGDLSEDMQQLPGEKAAITAAMNQVKHNLSTMNTEIKQ HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LAQAAANGDFTARGDAEQFQFDFRIMVESLNTLMATADGNLQSLSALLQSIAAGDLTARM HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHH SGQYRGVFAQMRDDANATAEQLASIVGRIQIAADAIGLASGEIASGNQDLSQRTEQQAAN CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH LEETAASMEELTSTVKQNAEHASQANQLAIGAAAVASQGGDVVAKVVTTMSDIQGSSKKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH AEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLI HHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH DDSVEKVTQGATLVDQAGTTMAEIVASVQRVTNIMGEISSASQEQYAGIEQVNQTVTHMD HHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHH EATQQNAALVEEATAAARSMEEQAGHLAEAVSVFKLDDSAAQAPQSARVRPITSRPVAVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHCCCCCCCCCCCCCCCCHHH SAARPVARAAASASRPATSQAALADGNWQEF HHHHHHHHHHHHCCCCCCCCHHCCCCCCCCC >Mature Secondary Structure MIALLQRYNVGKRLGFAFGTLILLSCALVVAGLYTLAQARQTLDTLTNRNMVIVQRLQEM CCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH NNAVSVIAVQLRNIVLPTSDAENRRFAAIIEDQRSIYKDAREKLYTFSATPAAQALRERI HHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHH DANNKAARALNQQVIDLGLAGKADQALPLLLQRAAPATQAWQDTLLEYSALQRQRAQEAN CCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH ALATTAMARGRAMLIGGGLAVVLISSVLAWLITRSLVVPLTRATRAAEAIAQGKLDNDVS HHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC ANFNDETGRLLHAMNDMQGQLRNLIAAQLGMAKRHEEGQISFRMDAGAFPGDFGRMAHDT CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHCCH NELVAAHIKVKMQTIHLIERYAIGDLSEDMQQLPGEKAAITAAMNQVKHNLSTMNTEIKQ HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH LAQAAANGDFTARGDAEQFQFDFRIMVESLNTLMATADGNLQSLSALLQSIAAGDLTARM HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHH SGQYRGVFAQMRDDANATAEQLASIVGRIQIAADAIGLASGEIASGNQDLSQRTEQQAAN CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH LEETAASMEELTSTVKQNAEHASQANQLAIGAAAVASQGGDVVAKVVTTMSDIQGSSKKI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHH AEIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAGAAKEIKHLI HHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH DDSVEKVTQGATLVDQAGTTMAEIVASVQRVTNIMGEISSASQEQYAGIEQVNQTVTHMD HHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHH EATQQNAALVEEATAAARSMEEQAGHLAEAVSVFKLDDSAAQAPQSARVRPITSRPVAVK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHCCCCCCCCCCCCCCCCHHH SAARPVARAAASASRPATSQAALADGNWQEF HHHHHHHHHHHHCCCCCCCCHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8419927; 11677609 [H]