| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is yncD [H]
Identifier: 77748509
GI number: 77748509
Start: 148458
End: 150653
Strand: Direct
Name: yncD [H]
Synonym: XAC0126
Alternate gene names: 77748509
Gene position: 148458-150653 (Clockwise)
Preceding gene: 77748507
Following gene: 21240901
Centisome position: 2.87
GC content: 68.9
Gene sequence:
>2196_bases ATGCTTCGTTCCGTACGCAACAATGCACTGACAGTACGGATAAGGGACACTAGGCGCATGTCCAGACTCACCTTGTTGGC CGCCGCCTGCGGCCTGTTCGCCACGGGCGCCACATCGCCTGTCCTGGCCGCCGATCCGGCGCCGCCCGCCGCCACATCGA TCCAGCGCCTGCCCGCCGTGCAGGTGGACGCCGCGCGCGTGCGCGGGGTGGACGACTTCGACCTGCCGGCCTCGTTCACC GTGGTGGCGGCCGATGACGACAACCGCCGCGGCGCGCAGGTGTCCGAGCTGCTGGACGGCATTCCCGGCCTGGTGGCGCG CGACCGCCAGAACTACGCGCAGGACACCCAGCTGTCGATCCGCGGCTTCGGCGCGCGCTCCACCTTCGGCGTGCGCGGCG TGCGGCTGTTGGTGGACGGCATTCCGGCCAGCATGCCCGACGGCCAGGGCCAGCTGTCGCACTTCAACGTGCTGGGCGCG CAACGGGTGGAAGTGCTGCGCGGGCCGTTTTCGGCGTTGTACGGCAACTCCTCCGGCGGCGTGCTGCAGCTGTGGAGCGC CGATGGCGAGCCGGACGACCCGTGGCGGCTGCGCGCCACCTACGGCAGCAACGCGACGGTCAACGTCGGCGCGCAAGTGC TCGGCCAGCAGGGCGCGGTGCATTACAACCTGGCCGCCAATCATTTCGACACCGATGGCTTCCGCGCCCATAGCCGCGCC AAGCGTGACTCGGTCAACGCCAAGCTCGGCTTCGATCTGGCCGAGGGCCGCCGGCTGGACCTGGTGCTCAACTATCTGGA CGCACCCGACGCGCAGGACCCGCTCGGCCTGACCCGTGCGCAGTTCAATGCCGACCCGGCACAGGCCACGTCGGTGGCGA CCCAGTTCGATACCCGCAAGTCGGTGCGTCAGTCGCAGGCCGGGGCCATCTTCACCCAGCGAATGGACGACCAGACGTTG CGCTTGATGGCCTATGGCGGCCAGCGCAGCGTGGAGCAATTCCTGGCGATCCCGGTGGCGGTGCAGCGCAACCCGCTGCA TTCGGGCGGGGTGATCGATCTGGACAGCAATTACGAAGGGGCCGATGCGCGCTGGGCCTGGCAGGGCGAGGCGCTGGGCC GGCCGCTGCAGCTGACCGTCGGCACCAATGTCGACCGCCAGCGCCAGCACCGCACCGGTTACGAGAACTTCGTCGGCGAC ACGCTGGGCGTCAAGGGCGCATTGCGCCGTGACCAGCGCGATGAGGTCGAGAACGTGGACCAGTTCGCGCAGCTGTGGTG GCAGTGGAGCGACCGCTGGTCGGCACTGCTGGGCGTGCGCCATAGCGACGTGCGCTTCGCGTCGGACGACCACTACATCG TGGGCCGCAATCCCGACGACAGCGGCCGGCGCGATTATTCGGCGACCACGCCGGTCGCCGGCATCGTGTTCCGTGCCGAC GAGAATCTGCGTTTCTACGCTTCGGTGGGACGCGGCTTCGAAACGCCCACCTTCAACGAACTGGGCTACCGCAGCGATGG CGGCGCCGGCCTGGCGCTGGACCTGGGCGCGGCCACCAGCCGCAACTACGAAGTGGGCAGCAAGTGGCGCGCGCAAAGCG GCGCGGCGCTGGAATTTACGGTCTTCCGCGCCGACACCGACGACGAGCTGGCGGTGGCCAGCAATACCAACGGGCGCAGC ACCTATCGCAACATCGGCGCCACCCGGCGCCAGGGCGCAGAGCTCAGCTGGCAGCAACCGATCGGTGCCACCCAGCAGCT GCAGCTGGCCTATACCTTCGTCGATGCCACCGTGCGCGATGGTTACCTCACCTGTGCCAGCAGCGGCTGCGCAACGCCCA CCGCAGCGGTGGCCAGCGGATCGCGCCTGCCTGGCGTGCCGCGTCAGCAACTGTTTGCGCGCTGGCAATGGCAGCCGGCG CAATGGCAGTTGGCTGCCGAATCGGTAGCCTCCGGCGCCACCGTGGTCAACGACCTGGCCACCGAACGTGCACCGGGCTA CGCGCTGGTGAACCTGGAAGCCTCCCGGCGCTGGAGCACCCCGCAGGGCGCATTGCGCACCTTCGCACGCATCGACAATG TGCTGGACCGGCAGTACGTGGGCTCGGTCATCGTCAACGATGGCAACGGCCGCTACTACGAGCCCGGCCCGGACCGCACC TACACGGTGGGGCTGCAATGGGATTTTGGCGGCTGA
Upstream 100 bases:
>100_bases CGGCATGACTCGCTGAAGGACGAAAGAGTGGGGTACTTCCGGATCGTTGACCGCTGCTGGGCCAAACCACTTCATCGTAG CAGCCCATGGCCGGCGTAGC
Downstream 100 bases:
>100_bases GCCGTCAATGGGCGGTGCGCGTTCAACAACACGTCCCGCCCGTAGGAGCGCCCCCGGGCGCGACAAAGCCGTCCCGCCAA TGCGCGCGTCGTCACGGCGA
Product: iron transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 731; Mature: 731
Protein sequence:
>731_residues MLRSVRNNALTVRIRDTRRMSRLTLLAAACGLFATGATSPVLAADPAPPAATSIQRLPAVQVDAARVRGVDDFDLPASFT VVAADDDNRRGAQVSELLDGIPGLVARDRQNYAQDTQLSIRGFGARSTFGVRGVRLLVDGIPASMPDGQGQLSHFNVLGA QRVEVLRGPFSALYGNSSGGVLQLWSADGEPDDPWRLRATYGSNATVNVGAQVLGQQGAVHYNLAANHFDTDGFRAHSRA KRDSVNAKLGFDLAEGRRLDLVLNYLDAPDAQDPLGLTRAQFNADPAQATSVATQFDTRKSVRQSQAGAIFTQRMDDQTL RLMAYGGQRSVEQFLAIPVAVQRNPLHSGGVIDLDSNYEGADARWAWQGEALGRPLQLTVGTNVDRQRQHRTGYENFVGD TLGVKGALRRDQRDEVENVDQFAQLWWQWSDRWSALLGVRHSDVRFASDDHYIVGRNPDDSGRRDYSATTPVAGIVFRAD ENLRFYASVGRGFETPTFNELGYRSDGGAGLALDLGAATSRNYEVGSKWRAQSGAALEFTVFRADTDDELAVASNTNGRS TYRNIGATRRQGAELSWQQPIGATQQLQLAYTFVDATVRDGYLTCASSGCATPTAAVASGSRLPGVPRQQLFARWQWQPA QWQLAAESVASGATVVNDLATERAPGYALVNLEASRRWSTPQGALRTFARIDNVLDRQYVGSVIVNDGNGRYYEPGPDRT YTVGLQWDFGG
Sequences:
>Translated_731_residues MLRSVRNNALTVRIRDTRRMSRLTLLAAACGLFATGATSPVLAADPAPPAATSIQRLPAVQVDAARVRGVDDFDLPASFT VVAADDDNRRGAQVSELLDGIPGLVARDRQNYAQDTQLSIRGFGARSTFGVRGVRLLVDGIPASMPDGQGQLSHFNVLGA QRVEVLRGPFSALYGNSSGGVLQLWSADGEPDDPWRLRATYGSNATVNVGAQVLGQQGAVHYNLAANHFDTDGFRAHSRA KRDSVNAKLGFDLAEGRRLDLVLNYLDAPDAQDPLGLTRAQFNADPAQATSVATQFDTRKSVRQSQAGAIFTQRMDDQTL RLMAYGGQRSVEQFLAIPVAVQRNPLHSGGVIDLDSNYEGADARWAWQGEALGRPLQLTVGTNVDRQRQHRTGYENFVGD TLGVKGALRRDQRDEVENVDQFAQLWWQWSDRWSALLGVRHSDVRFASDDHYIVGRNPDDSGRRDYSATTPVAGIVFRAD ENLRFYASVGRGFETPTFNELGYRSDGGAGLALDLGAATSRNYEVGSKWRAQSGAALEFTVFRADTDDELAVASNTNGRS TYRNIGATRRQGAELSWQQPIGATQQLQLAYTFVDATVRDGYLTCASSGCATPTAAVASGSRLPGVPRQQLFARWQWQPA QWQLAAESVASGATVVNDLATERAPGYALVNLEASRRWSTPQGALRTFARIDNVLDRQYVGSVIVNDGNGRYYEPGPDRT YTVGLQWDFGG >Mature_731_residues MLRSVRNNALTVRIRDTRRMSRLTLLAAACGLFATGATSPVLAADPAPPAATSIQRLPAVQVDAARVRGVDDFDLPASFT VVAADDDNRRGAQVSELLDGIPGLVARDRQNYAQDTQLSIRGFGARSTFGVRGVRLLVDGIPASMPDGQGQLSHFNVLGA QRVEVLRGPFSALYGNSSGGVLQLWSADGEPDDPWRLRATYGSNATVNVGAQVLGQQGAVHYNLAANHFDTDGFRAHSRA KRDSVNAKLGFDLAEGRRLDLVLNYLDAPDAQDPLGLTRAQFNADPAQATSVATQFDTRKSVRQSQAGAIFTQRMDDQTL RLMAYGGQRSVEQFLAIPVAVQRNPLHSGGVIDLDSNYEGADARWAWQGEALGRPLQLTVGTNVDRQRQHRTGYENFVGD TLGVKGALRRDQRDEVENVDQFAQLWWQWSDRWSALLGVRHSDVRFASDDHYIVGRNPDDSGRRDYSATTPVAGIVFRAD ENLRFYASVGRGFETPTFNELGYRSDGGAGLALDLGAATSRNYEVGSKWRAQSGAALEFTVFRADTDDELAVASNTNGRS TYRNIGATRRQGAELSWQQPIGATQQLQLAYTFVDATVRDGYLTCASSGCATPTAAVASGSRLPGVPRQQLFARWQWQPA QWQLAAESVASGATVVNDLATERAPGYALVNLEASRRWSTPQGALRTFARIDNVLDRQYVGSVIVNDGNGRYYEPGPDRT YTVGLQWDFGG
Specific function: Probable receptor, tonB-dependent [H]
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787723, Length=678, Percent_Identity=42.9203539823009, Blast_Score=522, Evalue=1e-149,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79541; Mature: 79541
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRSVRNNALTVRIRDTRRMSRLTLLAAACGLFATGATSPVLAADPAPPAATSIQRLPAV CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCE QVDAARVRGVDDFDLPASFTVVAADDDNRRGAQVSELLDGIPGLVARDRQNYAQDTQLSI EECHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEE RGFGARSTFGVRGVRLLVDGIPASMPDGQGQLSHFNVLGAQRVEVLRGPFSALYGNSSGG EECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHCCCCCCC VLQLWSADGEPDDPWRLRATYGSNATVNVGAQVLGQQGAVHYNLAANHFDTDGFRAHSRA EEEEEECCCCCCCCEEEEEECCCCCEEECCHHHHCCCCCEEEEEECCCCCCCCCHHHHHH KRDSVNAKLGFDLAEGRRLDLVLNYLDAPDAQDPLGLTRAQFNADPAQATSVATQFDTRK HHHCCCCEECCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHH SVRQSQAGAIFTQRMDDQTLRLMAYGGQRSVEQFLAIPVAVQRNPLHSGGVIDLDSNYEG HHHHHHCCEEEEECCCCCEEEEEEECCCHHHHHHHHCCEEEECCCCCCCCEEEECCCCCC ADARWAWQGEALGRPLQLTVGTNVDRQRQHRTGYENFVGDTLGVKGALRRDQRDEVENVD CCCEEEECCHHCCCCEEEEECCCCHHHHHHCCCHHHHCCCCCCCCHHHCCCHHHHHHHHH QFAQLWWQWSDRWSALLGVRHSDVRFASDDHYIVGRNPDDSGRRDYSATTPVAGIVFRAD HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEC ENLRFYASVGRGFETPTFNELGYRSDGGAGLALDLGAATSRNYEVGSKWRAQSGAALEFT CCEEEEEECCCCCCCCCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE VFRADTDDELAVASNTNGRSTYRNIGATRRQGAELSWQQPIGATQQLQLAYTFVDATVRD EEECCCCCCEEEEECCCCCHHHHHCCCHHHCCCCCCCCCCCCCCCEEEEEEEEEEHHCCC GYLTCASSGCATPTAAVASGSRLPGVPRQQLFARWQWQPAQWQLAAESVASGATVVNDLA CEEEECCCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH TERAPGYALVNLEASRRWSTPQGALRTFARIDNVLDRQYVGSVIVNDGNGRYYEPGPDRT HCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCE YTVGLQWDFGG EEEEEEECCCC >Mature Secondary Structure MLRSVRNNALTVRIRDTRRMSRLTLLAAACGLFATGATSPVLAADPAPPAATSIQRLPAV CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHCCCE QVDAARVRGVDDFDLPASFTVVAADDDNRRGAQVSELLDGIPGLVARDRQNYAQDTQLSI EECHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEE RGFGARSTFGVRGVRLLVDGIPASMPDGQGQLSHFNVLGAQRVEVLRGPFSALYGNSSGG EECCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHCCHHHHCCCCCCC VLQLWSADGEPDDPWRLRATYGSNATVNVGAQVLGQQGAVHYNLAANHFDTDGFRAHSRA EEEEEECCCCCCCCEEEEEECCCCCEEECCHHHHCCCCCEEEEEECCCCCCCCCHHHHHH KRDSVNAKLGFDLAEGRRLDLVLNYLDAPDAQDPLGLTRAQFNADPAQATSVATQFDTRK HHHCCCCEECCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHH SVRQSQAGAIFTQRMDDQTLRLMAYGGQRSVEQFLAIPVAVQRNPLHSGGVIDLDSNYEG HHHHHHCCEEEEECCCCCEEEEEEECCCHHHHHHHHCCEEEECCCCCCCCEEEECCCCCC ADARWAWQGEALGRPLQLTVGTNVDRQRQHRTGYENFVGDTLGVKGALRRDQRDEVENVD CCCEEEECCHHCCCCEEEEECCCCHHHHHHCCCHHHHCCCCCCCCHHHCCCHHHHHHHHH QFAQLWWQWSDRWSALLGVRHSDVRFASDDHYIVGRNPDDSGRRDYSATTPVAGIVFRAD HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCEEEEEEEC ENLRFYASVGRGFETPTFNELGYRSDGGAGLALDLGAATSRNYEVGSKWRAQSGAALEFT CCEEEEEECCCCCCCCCCHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEE VFRADTDDELAVASNTNGRSTYRNIGATRRQGAELSWQQPIGATQQLQLAYTFVDATVRD EEECCCCCCEEEEECCCCCHHHHHCCCHHHCCCCCCCCCCCCCCCEEEEEEEEEEHHCCC GYLTCASSGCATPTAAVASGSRLPGVPRQQLFARWQWQPAQWQLAAESVASGATVVNDLA CEEEECCCCCCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH TERAPGYALVNLEASRRWSTPQGALRTFARIDNVLDRQYVGSVIVNDGNGRYYEPGPDRT HCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCE YTVGLQWDFGG EEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]