| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is 21245074
Identifier: 21245074
GI number: 21245074
Start: 5158184
End: 5159440
Strand: Reverse
Name: 21245074
Synonym: XAC4362
Alternate gene names: NA
Gene position: 5159440-5158184 (Counterclockwise)
Preceding gene: 21245075
Following gene: 21245073
Centisome position: 99.69
GC content: 65.63
Gene sequence:
>1257_bases ATGCACCTGCGTTCGCTTTCGCTGTCTGTCGCGTTGTTGCTGGCCGCTGCGCTGCCTGCACAAGCGCTGGAGTTTTCCAA GGCCGAACTGGCGCGCGCCACCGCCCTGCAGAAACGCCTGGTCACGCTGGATTCGCATCTGGACACGCCGGCCAATCTGG AGCGCGCCGACTTCGACGTATTGCAGGCGCATAGGGGTAACCGCTTGTCGCAGGTGGATTACCCGCGCATGGTCGAAGGC GCGCTGGATGGCGGGTTCTGGGCGGTCTACACGGGACAGGGCGATCGCAGTGCGGCCGCGCACCTGGACGATCGCGATGC CGGTCTGCAGCGCTTGCTGAGGATCCACACATTGGTGGCCGCGCAATCGCAGCGTTTTGCACTGGCCACCACGCCGGCCG ATGCCGCGCGCATCAAGGCCGCCGGCAAGCGCGTGGTGTACATCAGCATGGAAAACGCCAGCCCGCTGGTGGCCGATCCT ACGTTGCTGCGTTTTTATTACGCGCAGGGGCTGCGCTTGATGAGCACCGTGCACTTTCTCAACAACGAGTTCGCCGACTC GGCCACCGACCCCAAGGGCGCGCAGTGGAACGGCCTGAGCCCGGCCGGCAAACAGCTGGTGCAACAGGCGCAGGCGTTGG GCATCGTGATCGATCAATCGCACGCCTCCGATGCGGTGTTCGACCAGTTGATTGCGCTGTCGCCGGTGCCGATCGTGCTT TCGCACAGCGGTGCGCGTGCGGTCTACAACCACCCGCGCAACATCGACGATGCACGCCTGAAGGTGCTGGCCGCGCATGG TGGAGTGATCCAGGTCAATTCCTACGGCGGCTACCTGGTGGACAGCGGCGCCAGCCCCGAGCGCAAGGCCGCCGAGAAGG CGCTCACCGACCAGTACGGCGGCTGGGAGCACGTCAAGATCGCCGACGGCACCAAGCTCAGCGTCGCGCTGAAGGACCTG GATGCGCGCTACCCGATCAAGCGCGCCACCGAAGAAGACTTCTTCGCGCATCTTGAGCACATCCTGGCAGTGGTCGGGCC CGAGCACGTGGGCATCGGCATGGATTGGGACGGCGGCGGCGGGGTGGTGGGTCTGGAAGATGTCTCCGACCTGCCGCGCA TCACCGCGTGGCTGTTGCGCAAGGGCTACACCGAGCAGCAGATCGCCGGTATCTGGGGCGGCAACCTCTTGCGCGTGATG GACCAGGCGCAGGCGTACGCGGCGGGGAATGGGGAATCGGGAGTGGGGAATCGGTAG
Upstream 100 bases:
>100_bases CGTGCGGATCGACCGCAGCGCTGCAGCATCCTAGATGTGGCCGTAGTGCGCGTGCGGCCAGCCGCTATGATCGGCTCACC CCCACTGCCTGTGAGATCGC
Downstream 100 bases:
>100_bases AGCGCGGGATTTGGGAATCGGGATTCGCAAAGCCGAGGCGGTCTGTCGTGCGGGGCTGGTTCTGCATGGGCCTGGCGGCG GGGCGCCGGCTTGGTTGTGG
Product: dipeptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 418; Mature: 418
Protein sequence:
>418_residues MHLRSLSLSVALLLAAALPAQALEFSKAELARATALQKRLVTLDSHLDTPANLERADFDVLQAHRGNRLSQVDYPRMVEG ALDGGFWAVYTGQGDRSAAAHLDDRDAGLQRLLRIHTLVAAQSQRFALATTPADAARIKAAGKRVVYISMENASPLVADP TLLRFYYAQGLRLMSTVHFLNNEFADSATDPKGAQWNGLSPAGKQLVQQAQALGIVIDQSHASDAVFDQLIALSPVPIVL SHSGARAVYNHPRNIDDARLKVLAAHGGVIQVNSYGGYLVDSGASPERKAAEKALTDQYGGWEHVKIADGTKLSVALKDL DARYPIKRATEEDFFAHLEHILAVVGPEHVGIGMDWDGGGGVVGLEDVSDLPRITAWLLRKGYTEQQIAGIWGGNLLRVM DQAQAYAAGNGESGVGNR
Sequences:
>Translated_418_residues MHLRSLSLSVALLLAAALPAQALEFSKAELARATALQKRLVTLDSHLDTPANLERADFDVLQAHRGNRLSQVDYPRMVEG ALDGGFWAVYTGQGDRSAAAHLDDRDAGLQRLLRIHTLVAAQSQRFALATTPADAARIKAAGKRVVYISMENASPLVADP TLLRFYYAQGLRLMSTVHFLNNEFADSATDPKGAQWNGLSPAGKQLVQQAQALGIVIDQSHASDAVFDQLIALSPVPIVL SHSGARAVYNHPRNIDDARLKVLAAHGGVIQVNSYGGYLVDSGASPERKAAEKALTDQYGGWEHVKIADGTKLSVALKDL DARYPIKRATEEDFFAHLEHILAVVGPEHVGIGMDWDGGGGVVGLEDVSDLPRITAWLLRKGYTEQQIAGIWGGNLLRVM DQAQAYAAGNGESGVGNR >Mature_418_residues MHLRSLSLSVALLLAAALPAQALEFSKAELARATALQKRLVTLDSHLDTPANLERADFDVLQAHRGNRLSQVDYPRMVEG ALDGGFWAVYTGQGDRSAAAHLDDRDAGLQRLLRIHTLVAAQSQRFALATTPADAARIKAAGKRVVYISMENASPLVADP TLLRFYYAQGLRLMSTVHFLNNEFADSATDPKGAQWNGLSPAGKQLVQQAQALGIVIDQSHASDAVFDQLIALSPVPIVL SHSGARAVYNHPRNIDDARLKVLAAHGGVIQVNSYGGYLVDSGASPERKAAEKALTDQYGGWEHVKIADGTKLSVALKDL DARYPIKRATEEDFFAHLEHILAVVGPEHVGIGMDWDGGGGVVGLEDVSDLPRITAWLLRKGYTEQQIAGIWGGNLLRVM DQAQAYAAGNGESGVGNR
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI11641269, Length=388, Percent_Identity=28.3505154639175, Blast_Score=135, Evalue=6e-32, Organism=Homo sapiens, GI193211608, Length=381, Percent_Identity=28.0839895013123, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI189458885, Length=373, Percent_Identity=28.1501340482574, Blast_Score=129, Evalue=6e-30, Organism=Homo sapiens, GI4758190, Length=373, Percent_Identity=28.1501340482574, Blast_Score=129, Evalue=6e-30, Organism=Homo sapiens, GI193211610, Length=381, Percent_Identity=28.0839895013123, Blast_Score=125, Evalue=5e-29, Organism=Drosophila melanogaster, GI281362638, Length=393, Percent_Identity=28.2442748091603, Blast_Score=139, Evalue=4e-33, Organism=Drosophila melanogaster, GI281362636, Length=393, Percent_Identity=28.2442748091603, Blast_Score=139, Evalue=4e-33, Organism=Drosophila melanogaster, GI221475880, Length=416, Percent_Identity=27.1634615384615, Blast_Score=129, Evalue=5e-30, Organism=Drosophila melanogaster, GI161083233, Length=337, Percent_Identity=25.8160237388724, Blast_Score=114, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 44943; Mature: 44943
Theoretical pI: Translated: 6.64; Mature: 6.64
Prosite motif: PS00148 ARGINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLRSLSLSVALLLAAALPAQALEFSKAELARATALQKRLVTLDSHLDTPANLERADFDV CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH LQAHRGNRLSQVDYPRMVEGALDGGFWAVYTGQGDRSAAAHLDDRDAGLQRLLRIHTLVA HHHHCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHH AQSQRFALATTPADAARIKAAGKRVVYISMENASPLVADPTLLRFYYAQGLRLMSTVHFL HCCCCEEEEECCCHHHHHHHCCCEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHH NNEFADSATDPKGAQWNGLSPAGKQLVQQAQALGIVIDQSHASDAVFDQLIALSPVPIVL HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCCEEE SHSGARAVYNHPRNIDDARLKVLAAHGGVIQVNSYGGYLVDSGASPERKAAEKALTDQYG ECCCCHHHHCCCCCCCHHHEEEEEECCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHCC GWEHVKIADGTKLSVALKDLDARYPIKRATEEDFFAHLEHILAVVGPEHVGIGMDWDGGG CEEEEEEECCCEEEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCC GVVGLEDVSDLPRITAWLLRKGYTEQQIAGIWGGNLLRVMDQAQAYAAGNGESGVGNR CEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MHLRSLSLSVALLLAAALPAQALEFSKAELARATALQKRLVTLDSHLDTPANLERADFDV CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH LQAHRGNRLSQVDYPRMVEGALDGGFWAVYTGQGDRSAAAHLDDRDAGLQRLLRIHTLVA HHHHCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHH AQSQRFALATTPADAARIKAAGKRVVYISMENASPLVADPTLLRFYYAQGLRLMSTVHFL HCCCCEEEEECCCHHHHHHHCCCEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHH NNEFADSATDPKGAQWNGLSPAGKQLVQQAQALGIVIDQSHASDAVFDQLIALSPVPIVL HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCCCCCEEE SHSGARAVYNHPRNIDDARLKVLAAHGGVIQVNSYGGYLVDSGASPERKAAEKALTDQYG ECCCCHHHHCCCCCCCHHHEEEEEECCCEEEEECCCCEEEECCCCCHHHHHHHHHHHHCC GWEHVKIADGTKLSVALKDLDARYPIKRATEEDFFAHLEHILAVVGPEHVGIGMDWDGGG CEEEEEEECCCEEEEEEECCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCC GVVGLEDVSDLPRITAWLLRKGYTEQQIAGIWGGNLLRVMDQAQAYAAGNGESGVGNR CEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]