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The map label for this gene is ytfM [H]

Identifier: 21244921

GI number: 21244921

Start: 4950735

End: 4952516

Strand: Reverse

Name: ytfM [H]

Synonym: XAC4204

Alternate gene names: 21244921

Gene position: 4952516-4950735 (Counterclockwise)

Preceding gene: 21244927

Following gene: 77748762

Centisome position: 95.69

GC content: 64.31

Gene sequence:

>1782_bases
ATGCTTAAAGTCGCGTTTGCTCTTTTCTTGCTGTGCACCCTGTTCGTTCCGCTGCAAGCGGTTGCTCGGGCAACCATCGA
CAAGATCGAAATCAAGGGGTTGGACGACGGCGACGACGCCGAGATGATCGAGAACATCCAGGTCTCCCTGTCTCTGTATG
AGGCCGTGGGCAAGGAGCAGGGCGAGTCGCGTCTGGAATATCTGTTGGCACAGGCCGAGCGGCAGACGCGTGAGGCGCTG
GAGCCGTTTGGCTATTACTCGCCGACCATTACGCTGGCCGCACCACGCGCCGGCGACAAAGTGACCGTGGTGATCACGGT
GGATCGTGGCGAGCCGGTGCGGGTGCGCACCTCGCATATCTCCATCACCGGCTGGGCCGAGCAGGACCGCTATCTGGGCC
AGGATCTCAAGCAGTTCGAGCCGCGCGAAGGCCAGGTCTTCAGCCATCCGCAGTACGAAGCCAGCAAGGTCCGCATCACC
CGGCGTCTGGCCGAGCGTGGCTACTTCGATGCCGACTTCACCCAGCGCCGCGTTGCGATCACGCGTGCCGAGCATGCGGC
CGACATCGATCTGAATTGGGACAGCGGCCGCCGCTACGACATGGGCAAGGTGCGCTTCGACTACGACTACTTCCGCGATG
GCCTGTTCGACCCGCTGGTGTACTGGGACGAAGGCAGCTACTACCACGAAGGCAAGCTTGACCGATTGCGCGAGTCGCTG
ACCAAGCTGGATTACTTCAGCACCATCGATATCCAACCCAAGCCCGAAGAGGCGGACGACCAGGGCTGCGTGCCGGTGGA
CGTCAAACTCACCCGCGCCAAGCGCACGGTCTACACCTCCGGCTTGAGCTACGGCAGCGAAAGCGGCGCCGGTGTGCGCG
GTGGCGTGGAGCGGCGTTACGTGAACGCGCGCGGCCACAAGATGGACACGCAGCTGGATTACGCGCAGAACCGCAAGAGC
CTGACCACCAGTTACCGCGTGCCGGCGTTCCGTTGGCTGGATGGCTGGTACACCGCCTCGGCGCGGCTGTACGACGAGCA
GACCGAGTACATCGACCTGCGCAACGTCAAACTCACCGGCAGCCGCAGCGGCCAGATCAACGAGCGCTGGAGCGCGATCG
CCTCGATCAACGCCTTGCGCGAGCGTTGGCGTTTCAGCAGCGGCGACGATTTCGAAGGCGCGGTGTACGAGACCTCCACA
CTGATCTATCCGCAACTGCAGGCCAACTACGTCAATGTCGACGACCGGCTGTTTCCGCGCAGTGGCGTGTCGGCGCAGAT
GTTCATTCGCGGCGGCGCCGAGGGTGCCGGCTCCGATACCAACTTCGGCCAGCTGTATGGCCAGCTGCGCTGGTTTCTGG
GCGCTGGCGACAATGGCCGGTTGATCCTGCGCGGGGAAGGCGGCACCACCTGGACCAGCGACCTGGTGGCGATGCCGCCG
AGCCTGCGCTTCTTCGCCGGTGGCGCCAACAGCATTCGCGGTTATGCGTTCCGCGAAGTCGGCCCACGCACGCCCAAGCC
GGACGAATTCGCGCTGGGTGCCAAGAACGTGGTCACCGCCAGTGCCGAATACGAGCATTACCTCAAGGGCGGCCCCTGGG
GCGGGGCGGTGTTCGTCGATGGCGGCAGCGCCTTCGATGACCGGCCGGACTGGCACACCGGTATCGGCTTCGGCCTGCGC
TGGCGCTCGCCGGTGGGCCCGGTGCGCGTGGATATCGCACATGGCTTGAACGACCCCGACTCGCAATTCCAGCTCTACAT
CGATATCGGGGCCAACCTGTGA

Upstream 100 bases:

>100_bases
CGTTAAAGTGATCTCGGCTCAAAGGAGGTTGCGCCGCCCGTATAGTCGCGTCTGCTCACATTTTTTAGCCCTTCACGCCA
AGGCTGGGTATCCTTTGCAG

Downstream 100 bases:

>100_bases
GCGCACCCTCACCTACGCCGCCGGCACCGCGCCCGCGCTTCTATCGCCGGCGCCGGTTCTGGGTGGGCTCGGGCCTGACC
GTGCTCGGGCTGGTGCTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 593; Mature: 593

Protein sequence:

>593_residues
MLKVAFALFLLCTLFVPLQAVARATIDKIEIKGLDDGDDAEMIENIQVSLSLYEAVGKEQGESRLEYLLAQAERQTREAL
EPFGYYSPTITLAAPRAGDKVTVVITVDRGEPVRVRTSHISITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRIT
RRLAERGYFDADFTQRRVAITRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFDPLVYWDEGSYYHEGKLDRLRESL
TKLDYFSTIDIQPKPEEADDQGCVPVDVKLTRAKRTVYTSGLSYGSESGAGVRGGVERRYVNARGHKMDTQLDYAQNRKS
LTTSYRVPAFRWLDGWYTASARLYDEQTEYIDLRNVKLTGSRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETST
LIYPQLQANYVNVDDRLFPRSGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNGRLILRGEGGTTWTSDLVAMPP
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVDGGSAFDDRPDWHTGIGFGLR
WRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL

Sequences:

>Translated_593_residues
MLKVAFALFLLCTLFVPLQAVARATIDKIEIKGLDDGDDAEMIENIQVSLSLYEAVGKEQGESRLEYLLAQAERQTREAL
EPFGYYSPTITLAAPRAGDKVTVVITVDRGEPVRVRTSHISITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRIT
RRLAERGYFDADFTQRRVAITRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFDPLVYWDEGSYYHEGKLDRLRESL
TKLDYFSTIDIQPKPEEADDQGCVPVDVKLTRAKRTVYTSGLSYGSESGAGVRGGVERRYVNARGHKMDTQLDYAQNRKS
LTTSYRVPAFRWLDGWYTASARLYDEQTEYIDLRNVKLTGSRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETST
LIYPQLQANYVNVDDRLFPRSGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNGRLILRGEGGTTWTSDLVAMPP
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVDGGSAFDDRPDWHTGIGFGLR
WRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL
>Mature_593_residues
MLKVAFALFLLCTLFVPLQAVARATIDKIEIKGLDDGDDAEMIENIQVSLSLYEAVGKEQGESRLEYLLAQAERQTREAL
EPFGYYSPTITLAAPRAGDKVTVVITVDRGEPVRVRTSHISITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRIT
RRLAERGYFDADFTQRRVAITRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFDPLVYWDEGSYYHEGKLDRLRESL
TKLDYFSTIDIQPKPEEADDQGCVPVDVKLTRAKRTVYTSGLSYGSESGAGVRGGVERRYVNARGHKMDTQLDYAQNRKS
LTTSYRVPAFRWLDGWYTASARLYDEQTEYIDLRNVKLTGSRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETST
LIYPQLQANYVNVDDRLFPRSGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNGRLILRGEGGTTWTSDLVAMPP
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVDGGSAFDDRPDWHTGIGFGLR
WRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=593, Percent_Identity=29.6795952782462, Blast_Score=240, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 66645; Mature: 66645

Theoretical pI: Translated: 5.35; Mature: 5.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKVAFALFLLCTLFVPLQAVARATIDKIEIKGLDDGDDAEMIENIQVSLSLYEAVGKEQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
GESRLEYLLAQAERQTREALEPFGYYSPTITLAAPRAGDKVTVVITVDRGEPVRVRTSHI
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEEEE
SITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRITRRLAERGYFDADFTQRRVAI
EEEECCHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEE
TRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFDPLVYWDEGSYYHEGKLDRLRESL
EECCCCEEEEEECCCCCEECCCEEEECHHHHHCCCCCCEEEECCCCEEECCCHHHHHHHH
TKLDYFSTIDIQPKPEEADDQGCVPVDVKLTRAKRTVYTSGLSYGSESGAGVRGGVERRY
HHHHCEEEECCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCHHEE
VNARGHKMDTQLDYAQNRKSLTTSYRVPAFRWLDGWYTASARLYDEQTEYIDLRNVKLTG
ECCCCCCCCCCHHHHHCCHHCCCEECCCEEEEECCEEEECEEEECCCCCEEEEEEEEEEC
SRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETSTLIYPQLQANYVNVDDRLFPR
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCEECCCCCCCCC
SGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNGRLILRGEGGTTWTSDLVAMPP
CCCCEEEEEECCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEECCCCCCCCCCCEECCC
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVD
CCEEEECCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCHHHHHCCCCCCCEEEEC
GGSAFDDRPDWHTGIGFGLRWRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL
CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure
MLKVAFALFLLCTLFVPLQAVARATIDKIEIKGLDDGDDAEMIENIQVSLSLYEAVGKEQ
CHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
GESRLEYLLAQAERQTREALEPFGYYSPTITLAAPRAGDKVTVVITVDRGEPVRVRTSHI
CHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCCEEEEEEEE
SITGWAEQDRYLGQDLKQFEPREGQVFSHPQYEASKVRITRRLAERGYFDADFTQRRVAI
EEEECCHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCHHEEEE
TRAEHAADIDLNWDSGRRYDMGKVRFDYDYFRDGLFDPLVYWDEGSYYHEGKLDRLRESL
EECCCCEEEEEECCCCCEECCCEEEECHHHHHCCCCCCEEEECCCCEEECCCHHHHHHHH
TKLDYFSTIDIQPKPEEADDQGCVPVDVKLTRAKRTVYTSGLSYGSESGAGVRGGVERRY
HHHHCEEEECCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCHHEE
VNARGHKMDTQLDYAQNRKSLTTSYRVPAFRWLDGWYTASARLYDEQTEYIDLRNVKLTG
ECCCCCCCCCCHHHHHCCHHCCCEECCCEEEEECCEEEECEEEECCCCCEEEEEEEEEEC
SRSGQINERWSAIASINALRERWRFSSGDDFEGAVYETSTLIYPQLQANYVNVDDRLFPR
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEECCEECCCCCCCCC
SGVSAQMFIRGGAEGAGSDTNFGQLYGQLRWFLGAGDNGRLILRGEGGTTWTSDLVAMPP
CCCCEEEEEECCCCCCCCCCHHHHHHHEEEEEEECCCCCEEEEECCCCCCCCCCCEECCC
SLRFFAGGANSIRGYAFREVGPRTPKPDEFALGAKNVVTASAEYEHYLKGGPWGGAVFVD
CCEEEECCCCCCCCEEEECCCCCCCCCCCEECCCCCEEEECCCHHHHHCCCCCCCEEEEC
GGSAFDDRPDWHTGIGFGLRWRSPVGPVRVDIAHGLNDPDSQFQLYIDIGANL
CCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]