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The map label for this gene is shlB [H]

Identifier: 21244831

GI number: 21244831

Start: 4826870

End: 4828552

Strand: Reverse

Name: shlB [H]

Synonym: XAC4114

Alternate gene names: 21244831

Gene position: 4828552-4826870 (Counterclockwise)

Preceding gene: 21244832

Following gene: 21244830

Centisome position: 93.3

GC content: 68.09

Gene sequence:

>1683_bases
ATGCGTATGACGTGTCTGGCCGCGGCGGCGTCCGCGTGTCTTCAGCTGGCCGCACCCGCGTGGGCGCAATCGCCGACCGA
TGCCACGGCTGCTGCGCAGTCCGCAGCGGCGGTGCCGGCCATGAAGGACCGGACCGATGCGGTCACCCTGCAGGTGCGCG
GCTTTCGCGTGCGCGATGTGGGCCACTACCCGGAGGCCGGCATCGACCCGCCCCGCATGCAGGCCGTGGCCGACGCTGCC
TTCGCCGAGCTGGCCCAGGGCCAGCCGGTGGTGGCGTTGCGCTTCGACCAGCTCCAGGCGGTGGCCGATGCCATCACCCG
CGCCTATCGCCAGGCCGGCTTCATCGTCAGCACGGCCTATCTGCCGGCGCAGACGCCGGGGCCCGATCAACTGATCGAGA
TCCGCGTGCTGGAAGGGCGCATCGGCCAGATCAGCGTGCAGGGCGCCGCACGCTACCGCGGCAACGCCTTGTCGGCACCG
CTGCGCCAGCTGCAGGGCCGCCCGCTGCGCAAGCAGGACGTGGACGCCGCGCTGTTGTATGCGCGCGATCTGCCCGGGGT
GTCGGTGTCGTCGGTATTGCAGCCCGGCCAGAAGGAAGGCGAGACCGACGTGGTGCTGGTCGCCAGCGAGGCCGCCCGCC
CGTATGTGATCACCCTGGGCGGCAACAACTACGGCACCGAGCTGACCGGCCGCTATCGCGCCCAGGCCGGCATTACCTGG
AATAGCCCGCTCGGCCTGGGCGACGTGTTCGCCGCCAACTACGCCTATTCGCTGGCGCCGCAGCAGAGCCAGATCGGCGC
GCTGTCGTATGGCTTGCCGATCGGTAGCGTGTCCGGCCTGAGCGCGGTGATCGGCGCCAGCCGCAGCGAACTGGAAGTGC
GCAACGGCGTGTTCGCCCGACTTGGCCTGAAGGGGCCGACCTCCATCGTCTACACCGGCGCCGACTGGAAATTCATCAAC
AGCCAAACGCTGCAGTTGCATGGCTCGGCGCGCTATCTGCGCGAGCAATCCAAGCTCAGTGCGCTGGGCATGCAGTTGTC
CGACCAGCAGTTCGATGTCGCCGAACTGGGCCTGTCGTTGCGGCGCACCGATCTGCGCTGGCGCGGTGTGGATCTGCTGC
AGGTGAGCGTGCGCCAATCCTTGCGCGACCGCTCGGCGCCGGTGGACCAGATCAGCCCCGGTCGCGACAGCTATTTCACC
ATCGCGCGGCTCGCCTACACGCGCCTGCAATACCTCACCCGTACGCAGCGGCTTTACTTCAAGTTCAACGGCCAATACAG
CGACGATACGCTGACCCCGATGGAGCAGTTCGCTGTCGGTGGGCCGGACAGCGTGCGCGCCTATCCGGTCTCCGATGCAT
TGGGCGACCGCGGGTATTACACCGCGCTTGAATACCACATCGACGCCCCCGGCTTTGCCGACGCCGCATCGCCGTTCAAT
GGCCGGCCCTGGCGCGAATTGCTGGAGCTGGATGTCTTCGCCGACCACGCCCGCGTGTTCGCCGCCAATGGCCGCCTGAC
ACCGGCCAGTTTCGATGCCGCCGGCGTGGGCCTGACCTTCCGCTTGCCGCAGTACGCCAATTTCGAATGGCGCATCAGCG
CCGCGCTTCCGACCGGCGCGCGCAATGCCTCCGACGGACGCGACGACGCCCGCATCTACACGCGTTTCGGCTTCACTTTT
TGA

Upstream 100 bases:

>100_bases
GACACGCCACCCGCTGTGCAGTGGCCACTTTGGCGCCTGTCTATGCAGCGGGACACGTCGGCCATGCGCAACAACGGATG
GTCTCAGGGGAAATGGACGT

Downstream 100 bases:

>100_bases
GGGATCTGCGCATGCACGCCACCATCCATCCCGCGACCTCGCCGCGCACGCTCCCGTTGCGTCATCGCCCGCTGGCCCTC
GCGCTGGCAGCTGCGCTGAT

Product: hemolysin activator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MRMTCLAAAASACLQLAAPAWAQSPTDATAAAQSAAAVPAMKDRTDAVTLQVRGFRVRDVGHYPEAGIDPPRMQAVADAA
FAELAQGQPVVALRFDQLQAVADAITRAYRQAGFIVSTAYLPAQTPGPDQLIEIRVLEGRIGQISVQGAARYRGNALSAP
LRQLQGRPLRKQDVDAALLYARDLPGVSVSSVLQPGQKEGETDVVLVASEAARPYVITLGGNNYGTELTGRYRAQAGITW
NSPLGLGDVFAANYAYSLAPQQSQIGALSYGLPIGSVSGLSAVIGASRSELEVRNGVFARLGLKGPTSIVYTGADWKFIN
SQTLQLHGSARYLREQSKLSALGMQLSDQQFDVAELGLSLRRTDLRWRGVDLLQVSVRQSLRDRSAPVDQISPGRDSYFT
IARLAYTRLQYLTRTQRLYFKFNGQYSDDTLTPMEQFAVGGPDSVRAYPVSDALGDRGYYTALEYHIDAPGFADAASPFN
GRPWRELLELDVFADHARVFAANGRLTPASFDAAGVGLTFRLPQYANFEWRISAALPTGARNASDGRDDARIYTRFGFTF

Sequences:

>Translated_560_residues
MRMTCLAAAASACLQLAAPAWAQSPTDATAAAQSAAAVPAMKDRTDAVTLQVRGFRVRDVGHYPEAGIDPPRMQAVADAA
FAELAQGQPVVALRFDQLQAVADAITRAYRQAGFIVSTAYLPAQTPGPDQLIEIRVLEGRIGQISVQGAARYRGNALSAP
LRQLQGRPLRKQDVDAALLYARDLPGVSVSSVLQPGQKEGETDVVLVASEAARPYVITLGGNNYGTELTGRYRAQAGITW
NSPLGLGDVFAANYAYSLAPQQSQIGALSYGLPIGSVSGLSAVIGASRSELEVRNGVFARLGLKGPTSIVYTGADWKFIN
SQTLQLHGSARYLREQSKLSALGMQLSDQQFDVAELGLSLRRTDLRWRGVDLLQVSVRQSLRDRSAPVDQISPGRDSYFT
IARLAYTRLQYLTRTQRLYFKFNGQYSDDTLTPMEQFAVGGPDSVRAYPVSDALGDRGYYTALEYHIDAPGFADAASPFN
GRPWRELLELDVFADHARVFAANGRLTPASFDAAGVGLTFRLPQYANFEWRISAALPTGARNASDGRDDARIYTRFGFTF
>Mature_560_residues
MRMTCLAAAASACLQLAAPAWAQSPTDATAAAQSAAAVPAMKDRTDAVTLQVRGFRVRDVGHYPEAGIDPPRMQAVADAA
FAELAQGQPVVALRFDQLQAVADAITRAYRQAGFIVSTAYLPAQTPGPDQLIEIRVLEGRIGQISVQGAARYRGNALSAP
LRQLQGRPLRKQDVDAALLYARDLPGVSVSSVLQPGQKEGETDVVLVASEAARPYVITLGGNNYGTELTGRYRAQAGITW
NSPLGLGDVFAANYAYSLAPQQSQIGALSYGLPIGSVSGLSAVIGASRSELEVRNGVFARLGLKGPTSIVYTGADWKFIN
SQTLQLHGSARYLREQSKLSALGMQLSDQQFDVAELGLSLRRTDLRWRGVDLLQVSVRQSLRDRSAPVDQISPGRDSYFT
IARLAYTRLQYLTRTQRLYFKFNGQYSDDTLTPMEQFAVGGPDSVRAYPVSDALGDRGYYTALEYHIDAPGFADAASPFN
GRPWRELLELDVFADHARVFAANGRLTPASFDAAGVGLTFRLPQYANFEWRISAALPTGARNASDGRDDARIYTRFGFTF

Specific function: Member of a two partner secretion pathway (TPS) in which it mediates the secretion of hemolysin [H]

COG id: COG2831

COG function: function code U; Hemolysin activation/secretion protein

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tpsB (TC 1.B.20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005565
- InterPro:   IPR013686 [H]

Pfam domain/function: PF08479 POTRA_2; PF03865 ShlB [H]

EC number: NA

Molecular weight: Translated: 60634; Mature: 60634

Theoretical pI: Translated: 8.98; Mature: 8.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMTCLAAAASACLQLAAPAWAQSPTDATAAAQSAAAVPAMKDRTDAVTLQVRGFRVRDV
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECEEEEEC
GHYPEAGIDPPRMQAVADAAFAELAQGQPVVALRFDQLQAVADAITRAYRQAGFIVSTAY
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEE
LPAQTPGPDQLIEIRVLEGRIGQISVQGAARYRGNALSAPLRQLQGRPLRKQDVDAALLY
CCCCCCCCCCEEEEEEECCCCCEEEECCCHHCCCCCHHHHHHHHCCCCCCHHCCCEEEEE
ARDLPGVSVSSVLQPGQKEGETDVVLVASEAARPYVITLGGNNYGTELTGRYRAQAGITW
ECCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCEE
NSPLGLGDVFAANYAYSLAPQQSQIGALSYGLPIGSVSGLSAVIGASRSELEVRNGVFAR
CCCCCCCHHHHHCCEEEECCCCHHCCEEEECCCCCCCCCHHHHHCCCCCHHHHHCCEEEE
LGLKGPTSIVYTGADWKFINSQTLQLHGSARYLREQSKLSALGMQLSDQQFDVAELGLSL
ECCCCCCEEEEECCCEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHH
RRTDLRWRGVDLLQVSVRQSLRDRSAPVDQISPGRDSYFTIARLAYTRLQYLTRTQRLYF
EECCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEE
KFNGQYSDDTLTPMEQFAVGGPDSVRAYPVSDALGDRGYYTALEYHIDAPGFADAASPFN
EECCCCCCCCCCCHHHHCCCCCCCCEEEECHHHCCCCCEEEEEEEEECCCCCCCCCCCCC
GRPWRELLELDVFADHARVFAANGRLTPASFDAAGVGLTFRLPQYANFEWRISAALPTGA
CCCHHHHHHHHHEECCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCC
RNASDGRDDARIYTRFGFTF
CCCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MRMTCLAAAASACLQLAAPAWAQSPTDATAAAQSAAAVPAMKDRTDAVTLQVRGFRVRDV
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEEEECEEEEEC
GHYPEAGIDPPRMQAVADAAFAELAQGQPVVALRFDQLQAVADAITRAYRQAGFIVSTAY
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEE
LPAQTPGPDQLIEIRVLEGRIGQISVQGAARYRGNALSAPLRQLQGRPLRKQDVDAALLY
CCCCCCCCCCEEEEEEECCCCCEEEECCCHHCCCCCHHHHHHHHCCCCCCHHCCCEEEEE
ARDLPGVSVSSVLQPGQKEGETDVVLVASEAARPYVITLGGNNYGTELTGRYRAQAGITW
ECCCCCCCHHHHHCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCEEEEEEECCEE
NSPLGLGDVFAANYAYSLAPQQSQIGALSYGLPIGSVSGLSAVIGASRSELEVRNGVFAR
CCCCCCCHHHHHCCEEEECCCCHHCCEEEECCCCCCCCCHHHHHCCCCCHHHHHCCEEEE
LGLKGPTSIVYTGADWKFINSQTLQLHGSARYLREQSKLSALGMQLSDQQFDVAELGLSL
ECCCCCCEEEEECCCEEEECCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCHH
RRTDLRWRGVDLLQVSVRQSLRDRSAPVDQISPGRDSYFTIARLAYTRLQYLTRTQRLYF
EECCCEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCEEEEE
KFNGQYSDDTLTPMEQFAVGGPDSVRAYPVSDALGDRGYYTALEYHIDAPGFADAASPFN
EECCCCCCCCCCCHHHHCCCCCCCCEEEECHHHCCCCCEEEEEEEEECCCCCCCCCCCCC
GRPWRELLELDVFADHARVFAANGRLTPASFDAAGVGLTFRLPQYANFEWRISAALPTGA
CCCHHHHHHHHHEECCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCC
RNASDGRDDARIYTRFGFTF
CCCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3290200 [H]