| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is nrdA [H]
Identifier: 21244792
GI number: 21244792
Start: 4769959
End: 4772457
Strand: Reverse
Name: nrdA [H]
Synonym: XAC4075
Alternate gene names: 21244792
Gene position: 4772457-4769959 (Counterclockwise)
Preceding gene: 21244793
Following gene: 21244791
Centisome position: 92.21
GC content: 63.11
Gene sequence:
>2499_bases ATGACCACCAACGACACCCTTTCCGCGATCGCCGCCGGTACCGCAACACCCACCAGCGTTCCCGCCAGCGTTGCCGCGCC CGCCTGCGGCGCGCCGGAATTGACCGACCCGTCGGACATCGTGCCGCCTCCCCGCCAAGCCATTGCAATGCACGCACAGA CCATCGAAGAACAAAACGTCTCCACCTGGATCACGAAAGAAGCGGGCAATCGCAAGATTCCGTTCGAGCCGGAGCGCCTG GATCGCGCCATCGACCAGATCCATGCCGAGTTCCCGCAGCTGGACGTGGCCGACTACAAGCGCTCGGTGTTCGGGTTCGT CGAGCGCAAGGACAGCGTCAACGCCGACGACCTGGTCGACCACCTGATCCGCGAGGCCGAAGCCCGTGTCGATCTGACCA CCCCGGAATGGGAGCACTTCGCTGCGCGTCTGTACCTGCGCCGCCTGTACAAGCGCGCCAGCCGCAACCGTTTCTACGAC GCCAGCCAGAAGTACGGCTCGTTCGTCGGCCTGCAGGAAAGCCTGGCCGACCGCAATGTCTATTCCAACGACATCCTGCG TCGCTATTCCAAGGACGAGCTGATCGAAGCCGGCAAGATGATCGAGCCCGAGCGCGACAAGCTGTTCGCCTACAACGGCC TGTACCTGCTGGCCACGCGTTACCTGGCCACCGACAGCTCGCGCGGCGTGTTCGAACTGCCGCAGGAACGCTGGCTGACC ATCGCGCTGTACCTGATGCAGGACGAGATCGGTACCGGCAAGGGCAGCCGCGAGCGCCGCATGCAGCTGGTCGGCGAGGC CTACTGGGCGCTGTCCAACCTGTACATGACCGTGGCCACCCCGACCCTGGCCAATGCCGGCAAGGTCGGCGGCCAGCTGT CGAGCTGCTTCATCGACACCGTCGACGACAGCCTGCAGGGCATCTACGACTCCAATACCGACGTAGCGCGCGTGTCCAAG CACGGCGGCGGCGTCGGCGCCTACCTGGGCTATGTGCGTTCGTCGGGTTCGGCGATCCGCGGCGTGTCCAACTCGTCCGG CGGCGTGGTGCCGTGGATCAAGCAGCTCAACAACACCGCCGTGTCGGTGGACCAGCTGGGCCAGCGCAAGGGCGCCATCG CGGTCTATCTGGACATCTTCCACCGCGACATCGAAGCGTTCCTGGACCTGCGCCTGAACAACGGCGACCAGCGCCTGCGC GCGCACGACGTGTTCACCTCGGTGTGCATCCCCGACCTGTTCATGGAAGCGGTCGAGCGCCGCGGCGACTGGTACCTGTT CGACCCGCACGAGGTGAAGCGGATCAAGGGTTGGTACCTGCAGGATTTCTTCGATGAGAAGAAGGGCGACGCCAACGGCA GCTTCCGTCGCAAGTACGAAGAAGTCGTCGCCGACGAGCGCATCACGCGCAAGACCGTCAAGGCGATCGAGATCTTCAAG CGCATCATGGTCAGCCAGCTGGAAACCGGCAACCCGTTCATGTTCTATCGCGATGAAGTCAATCGCAAGAACCCGAACAA GCACGAGGGCATGGTCTATTCGTCCAACCTGTGCACCGAGATCCTGCAGAACATGAGCCCGACGCGGATGATGCAGGAGA TCATCAGCGGCAATCAGATCGTCACCACCAAGAAGGCGGGCGATTTCGTCGTGTGCAACCTGTCCTCGATCAACCTGGGC CGCGCGATCACCGTGCAGGCCGACCAGGCCGATCTGCTGGGCGCCGACGTGCTGGAGCGGTTGATCCCGATCCAGGTGCG CATGCTCGACAACGTGATCGATCTGAACCAGTTGCCGGTGCCGCAGGCCACCATCACCAACCAGAAGTACCGCGCGATCG GTCTTGGCACCTTCGGCTGGCATCATCTGCTGGCGCAGAAGAGCATCCATTGGAATGCCAAGGAAGCCGAGGACTACAGC GACGAGCTGTACGAGCGCATCAACTACCTGACCATCCAGGCGAGCATGGAGCTGGCCAAGGAAAAGGGCACCTACAGCGT GTTCCGCGGCAGCGACTGGCACAACGGCGAGTACTTCCGTGCACGCGACTACAACAGCCCGCAATGGCTGGAGCTGTCGG CGCAGGTGGCGGTCAATGGCGTGCGCAATGCCTGGATGCTGGCGGTTGCACCGAACATGAGCACCGCGCAGATCGCCGGT TCCACCGCCTCCATCGACCCGATCTACAGCGCGTTCTACTACGAAGAAAAGAAGGACTTCCGTCGCCCGGTTGCCGCGCC CGGCCTGTCGCTGGAGACCTGGCCGTACTACGAAAAGGGCGCCTACAAGGTCGACCAGTTCGCCAGCGTGCGCCAGAACG CGCGCCGCCAGCGGCATGTGGACCAATCGATCAGCTTCAACTTCTACGTGCCCAGCACCATCCGTGCGAGCACGCTGCTG GACCTGCACATGACCGCCTGGCGCGAAGGCTTGAAGACCACGTACTACGTGCGTTCCAACGACATCGACATCAGTGAGTG CGAGTGGTGCAGTAGCTAA
Upstream 100 bases:
>100_bases TTGCGTGCCGCTCGTCCCGCACCGCCATCGCTGTCCAGGGAATCCGGATCCGGTCGCAGCCCGTCCCGAGCGGGTTCGTG TGCCTACGCATGGAGGACGC
Downstream 100 bases:
>100_bases GCGCATTCGCGCTTCGCTTCCACGGTTCGCGTTGCGAACCGTGGACCCTGCTTCATCAGCTTCCACACCCCGCGCCTTTG GCGCGCCCCCTGACTCAGGG
Product: ribonucleotide-diphosphate reductase subunit alpha
Products: NA
Alternate protein names: Ribonucleotide reductase [H]
Number of amino acids: Translated: 832; Mature: 831
Protein sequence:
>832_residues MTTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERL DRAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYD ASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLT IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSK HGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLR AHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLG RAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYS DELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAG STASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNFYVPSTIRASTLL DLHMTAWREGLKTTYYVRSNDIDISECEWCSS
Sequences:
>Translated_832_residues MTTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERL DRAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYD ASQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLT IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSK HGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLR AHDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLG RAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYS DELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAG STASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNFYVPSTIRASTLL DLHMTAWREGLKTTYYVRSNDIDISECEWCSS >Mature_831_residues TTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNVSTWITKEAGNRKIPFEPERLD RAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVDHLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYDA SQKYGSFVGLQESLADRNVYSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLTI ALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKH GGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTAVSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRA HDVFTSVCIPDLFMEAVERRGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFKR IMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQIVTTKKAGDFVVCNLSSINLGR AITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPVPQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSD ELYERINYLTIQASMELAKEKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAGS TASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHVDQSISFNFYVPSTIRASTLLD LHMTAWREGLKTTYYVRSNDIDISECEWCSS
Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]
COG id: COG0209
COG function: function code F; Ribonucleotide reductase, alpha subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ATP-cone domain [H]
Homologues:
Organism=Homo sapiens, GI4506749, Length=723, Percent_Identity=30.4287690179806, Blast_Score=303, Evalue=5e-82, Organism=Escherichia coli, GI1789030, Length=687, Percent_Identity=30.5676855895196, Blast_Score=280, Evalue=2e-76, Organism=Escherichia coli, GI2367133, Length=740, Percent_Identity=26.7567567567568, Blast_Score=231, Evalue=1e-61, Organism=Caenorhabditis elegans, GI17555242, Length=742, Percent_Identity=30.7277628032345, Blast_Score=305, Evalue=8e-83, Organism=Saccharomyces cerevisiae, GI6320914, Length=746, Percent_Identity=30.9651474530831, Blast_Score=306, Evalue=1e-83, Organism=Saccharomyces cerevisiae, GI6322123, Length=746, Percent_Identity=31.0991957104558, Blast_Score=303, Evalue=7e-83, Organism=Drosophila melanogaster, GI17352481, Length=738, Percent_Identity=29.5392953929539, Blast_Score=291, Evalue=1e-78,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR013346 - InterPro: IPR013509 - InterPro: IPR000788 - InterPro: IPR008926 [H]
Pfam domain/function: PF03477 ATP-cone; PF02867 Ribonuc_red_lgC; PF00317 Ribonuc_red_lgN [H]
EC number: =1.17.4.1 [H]
Molecular weight: Translated: 94162; Mature: 94031
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS51161 ATP_CONE ; PS00089 RIBORED_LARGE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNV CCCCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC STWITKEAGNRKIPFEPERLDRAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVD CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH HLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYDASQKYGSFVGLQESLADRNV HHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC YSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLT HHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCEECCCHHHEE IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT EEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHH VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA HHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCE VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER EEHHHHCCCCCCEEEEHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC RGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK CCCEEEECHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI HHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHCCCEE VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV EEEECCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTIQASMELAK CCHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHH EKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAG CCCCEEEECCCCCCCCCEEEECCCCCCCEEEEEHHHHHHCCCCEEEEEECCCCCHHHCCC STASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHV CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC DQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSNDIDISECEWCSS CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCCCCCC >Mature Secondary Structure TTNDTLSAIAAGTATPTSVPASVAAPACGAPELTDPSDIVPPPRQAIAMHAQTIEEQNV CCCHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC STWITKEAGNRKIPFEPERLDRAIDQIHAEFPQLDVADYKRSVFGFVERKDSVNADDLVD CEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH HLIREAEARVDLTTPEWEHFAARLYLRRLYKRASRNRFYDASQKYGSFVGLQESLADRNV HHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCC YSNDILRRYSKDELIEAGKMIEPERDKLFAYNGLYLLATRYLATDSSRGVFELPQERWLT HHHHHHHHCCHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHHCCCCCCCEECCCHHHEE IALYLMQDEIGTGKGSRERRMQLVGEAYWALSNLYMTVATPTLANAGKVGGQLSSCFIDT EEEEEEHHCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHH VDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRSSGSAIRGVSNSSGGVVPWIKQLNNTA HHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHCCCE VSVDQLGQRKGAIAVYLDIFHRDIEAFLDLRLNNGDQRLRAHDVFTSVCIPDLFMEAVER EEHHHHCCCCCCEEEEHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHC RGDWYLFDPHEVKRIKGWYLQDFFDEKKGDANGSFRRKYEEVVADERITRKTVKAIEIFK CCCEEEECHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RIMVSQLETGNPFMFYRDEVNRKNPNKHEGMVYSSNLCTEILQNMSPTRMMQEIISGNQI HHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEHHHHHHHHHCCCHHHHHHHHHCCCEE VTTKKAGDFVVCNLSSINLGRAITVQADQADLLGADVLERLIPIQVRMLDNVIDLNQLPV EEEECCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC PQATITNQKYRAIGLGTFGWHHLLAQKSIHWNAKEAEDYSDELYERINYLTIQASMELAK CCHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHH EKGTYSVFRGSDWHNGEYFRARDYNSPQWLELSAQVAVNGVRNAWMLAVAPNMSTAQIAG CCCCEEEECCCCCCCCCEEEECCCCCCCEEEEEHHHHHHCCCCEEEEEECCCCCHHHCCC STASIDPIYSAFYYEEKKDFRRPVAAPGLSLETWPYYEKGAYKVDQFASVRQNARRQRHV CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC DQSISFNFYVPSTIRASTLLDLHMTAWREGLKTTYYVRSNDIDISECEWCSS CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]