Click here to switch to the map view.

The map label for this gene is desR [H]

Identifier: 21244711

GI number: 21244711

Start: 4684547

End: 4685149

Strand: Reverse

Name: desR [H]

Synonym: XAC3993

Alternate gene names: 21244711

Gene position: 4685149-4684547 (Counterclockwise)

Preceding gene: 21244712

Following gene: 21244710

Centisome position: 90.52

GC content: 66.17

Gene sequence:

>603_bases
ATGATCCGGGTGTTGTTGGCCGAAGACCAAGCCTTGCTGCGTGGCGCGCTGGTGGCCTTGCTCGGGCTGGAGGACGATAT
CGCGGTGGTCGGCAGCGCCGGCGATGGCGAAAGCGCATGGCGCGAGCTGCAGCGCCTGCAGCCGGACGTGCTGGTCACCG
ATATCGAGATGCCCGGCCTGACCGGGCTGGAACTGGCGCAGCGGATCCAGCGGCAGGCGCTGCCGGTACGGGTCATGATC
GTCACCACGTTCGCGCGTCCGGGATTTTTGCGCCGTGCGCTGGATGCCGGCGTGGCTGGGTATCTGCTCAAGGATGCGCC
CGCCGAACAACTGGTCGATGCGTTGCGGCAGGTGCATCGCGGCGGGCGAGTGATCGACCCGCAGCTGGCCATCGATGCGT
GGGTGGAAGCAGACCCCTTGAGCGAACGCGAACGAACCGTGCTGCGCCTGGCTGGCGAAGGCCGCTCCGCCAGCGAGATT
GCCCAACAGTTGCAGCTCTCGCACGGCACGGTGCGCAATTACTTGTCCGAATGCATCGGCAAACTGGGCGTGGCCAATCG
CATCGAAGCCTATCGCCTGGCGCGACAGAAGGGCTGGTTGTAG

Upstream 100 bases:

>100_bases
GCCGCAGTCGCTTTAACGCGCCCTGCTTGCGCTGCCAAGTGCACGGCATGCGTCGGCGCTGTTATCGTGCGCAACCGTTG
CATGCATACGAGCGCGACCG

Downstream 100 bases:

>100_bases
CGCGACCGTTCGACGGATCGCGTCTGCGCGCGTGGGCCTTGCGTTGCCGGGTGCGGCGTTGCTCGCAGAAGCGATGCGAT
CGCACCAGGCTGCAGCCACT

Product: two-component system regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MIRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRLQPDVLVTDIEMPGLTGLELAQRIQRQALPVRVMI
VTTFARPGFLRRALDAGVAGYLLKDAPAEQLVDALRQVHRGGRVIDPQLAIDAWVEADPLSERERTVLRLAGEGRSASEI
AQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL

Sequences:

>Translated_200_residues
MIRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRLQPDVLVTDIEMPGLTGLELAQRIQRQALPVRVMI
VTTFARPGFLRRALDAGVAGYLLKDAPAEQLVDALRQVHRGGRVIDPQLAIDAWVEADPLSERERTVLRLAGEGRSASEI
AQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL
>Mature_200_residues
MIRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRLQPDVLVTDIEMPGLTGLELAQRIQRQALPVRVMI
VTTFARPGFLRRALDAGVAGYLLKDAPAEQLVDALRQVHRGGRVIDPQLAIDAWVEADPLSERERTVLRLAGEGRSASEI
AQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL

Specific function: Member of the two-component regulatory system desR/desK, responsible for cold induction of the des gene coding for the Delta5 acyl-lipid desaturase [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=208, Percent_Identity=33.1730769230769, Blast_Score=104, Evalue=3e-24,
Organism=Escherichia coli, GI1790102, Length=202, Percent_Identity=35.1485148514851, Blast_Score=103, Evalue=6e-24,
Organism=Escherichia coli, GI1788521, Length=207, Percent_Identity=31.8840579710145, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1787473, Length=198, Percent_Identity=32.3232323232323, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788712, Length=204, Percent_Identity=22.5490196078431, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788546, Length=196, Percent_Identity=29.0816326530612, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786747, Length=202, Percent_Identity=24.7524752475248, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011990
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21904; Mature: 21904

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRLQPDVLVTDIEMPGL
CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCC
TGLELAQRIQRQALPVRVMIVTTFARPGFLRRALDAGVAGYLLKDAPAEQLVDALRQVHR
CHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHH
GGRVIDPQLAIDAWVEADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIG
CCCEECCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
KLGVANRIEAYRLARQKGWL
HHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRVLLAEDQALLRGALVALLGLEDDIAVVGSAGDGESAWRELQRLQPDVLVTDIEMPGL
CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCC
TGLELAQRIQRQALPVRVMIVTTFARPGFLRRALDAGVAGYLLKDAPAEQLVDALRQVHR
CHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHH
GGRVIDPQLAIDAWVEADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIG
CCCEECCHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHH
KLGVANRIEAYRLARQKGWL
HHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]