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The map label for this gene is prtI [H]

Identifier: 21244707

GI number: 21244707

Start: 4680937

End: 4681452

Strand: Reverse

Name: prtI [H]

Synonym: XAC3989

Alternate gene names: 21244707

Gene position: 4681452-4680937 (Counterclockwise)

Preceding gene: 21244710

Following gene: 21244706

Centisome position: 90.45

GC content: 67.44

Gene sequence:

>516_bases
ATGGATGCTTTGGACGATGACCAACTGCGCGCCGTGCTGCCGGCACTGCGCCGCTTTGCGCGCTCGCTGAGCGGCGAGCC
CGCCAGCGCCGACGATCTGGTGCAAGCCACACTGGAGCGCGCGCTGCGGCGGTGGCGCACCCGGCATACCGCTGAAGCCC
TGCAGCCCTGGCTGTTCGCCATCCTGTACCGGCAGTTTCTGGATGGGCAGCGGCGTGCCGCGCGCTGGCAGCGGGTCGTG
GGCCTGTTCGCGCCGCAGCAGCCCAGCCAATCCGCGTCCGCTGAGCAGGTGCACGACGGCCGTGCCATGCTGGCCAGCCT
TGCATCATTGCCGGCCGAACAACGCGCGTTGCTGCTCTTGGTCAGCGTGGAGGGTTTCAGTTATCGCGAAGTGGCCGACA
CCCTTGGCATCCCGATCGGCACCGTGATGTCGCGCCTGTCGCGTGCGCGCGAACGCCTGCGTGCCGTGAACGAAGGCCAG
GTGAAACACGCACCTGCATTGAGGATCCTGAAATGA

Upstream 100 bases:

>100_bases
CGTTATTCCCTCGTCCACCAACGACGGTGGCACGCACCGATCGCGGGAATAATCCACGCTCCAGTGCGTCTACCGTGTGA
TGTCACTACCACGCCCGCCA

Downstream 100 bases:

>100_bases
CCGCCATACCGCCCGACGAACACGCGCTGCACGCATACGTCGATGGCCGCCTGGCGCCGGAGCAACATGCAGCAGTGGCA
GCCTGGCTACAGGCGCATCC

Product: ECF sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWRTRHTAEALQPWLFAILYRQFLDGQRRAARWQRVV
GLFAPQQPSQSASAEQVHDGRAMLASLASLPAEQRALLLLVSVEGFSYREVADTLGIPIGTVMSRLSRARERLRAVNEGQ
VKHAPALRILK

Sequences:

>Translated_171_residues
MDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWRTRHTAEALQPWLFAILYRQFLDGQRRAARWQRVV
GLFAPQQPSQSASAEQVHDGRAMLASLASLPAEQRALLLLVSVEGFSYREVADTLGIPIGTVMSRLSRARERLRAVNEGQ
VKHAPALRILK
>Mature_171_residues
MDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWRTRHTAEALQPWLFAILYRQFLDGQRRAARWQRVV
GLFAPQQPSQSASAEQVHDGRAMLASLASLPAEQRALLLLVSVEGFSYREVADTLGIPIGTVMSRLSRARERLRAVNEGQ
VKHAPALRILK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19146; Mature: 19146

Theoretical pI: Translated: 11.56; Mature: 11.56

Prosite motif: PS00622 HTH_LUXR_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWRTRHTAEALQPWLFA
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILYRQFLDGQRRAARWQRVVGLFAPQQPSQSASAEQVHDGRAMLASLASLPAEQRALLLL
HHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHEEEE
VSVEGFSYREVADTLGIPIGTVMSRLSRARERLRAVNEGQVKHAPALRILK
EECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC
>Mature Secondary Structure
MDALDDDQLRAVLPALRRFARSLSGEPASADDLVQATLERALRRWRTRHTAEALQPWLFA
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILYRQFLDGQRRAARWQRVVGLFAPQQPSQSASAEQVHDGRAMLASLASLPAEQRALLLL
HHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHEEEE
VSVEGFSYREVADTLGIPIGTVMSRLSRARERLRAVNEGQVKHAPALRILK
EECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]