| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is bpH1
Identifier: 21244697
GI number: 21244697
Start: 4672314
End: 4673165
Strand: Reverse
Name: bpH1
Synonym: XAC3979
Alternate gene names: NA
Gene position: 4673165-4672314 (Counterclockwise)
Preceding gene: 21244702
Following gene: 21244696
Centisome position: 90.29
GC content: 65.38
Gene sequence:
>852_bases ATGAGCAACGGCAATGGTGTAACGGCAACCCTGTCCGACGCCGTCGATAGCGTAAAAAGCACCGCCACCGAGTTGACCGA GACCATCGCCAGCACCGCCAGCGAGGCGGTTGCCAGCGTGCAGGAGGCTGCAGGCACGGCGGTGGAAGAGGTCAAGACGC AGGTGGCCAAAGCGCGCAAGGCGGTGGTCAAGGTCGAAAAGAACGTGGCCAGGAACGCCGGCACTGCGGCCAGCGCAGTG AAACGCAGCGTGGCCAAGACCAAGCGCTCGCTGGCGGCCACCAAGGACGCTGCCAAGGACAAGCTGGTCGCCACCAAGGA GGCCGCCAAGCAGAAGCTCACCGCCACCAAGGACGTGGCCAAGCAAACGTTGACCTCGACCACGCAGGCCGCCAAGCAGA AGTTGAGCAGCACCAGCGCCGCGGCCAAGCAGAAGCTCACAGACACCAAGGCCAATACCAGGCGCAAGCTGGAAACCGCC AAGGCCAATGCCAGGGCCGAAGCGGCCGCACTGAATGCCAAGACCGCCGCCAAGCGCGCCGCACGCAAGACCGCCGTTGC AACGGTGAACGCGCGCACGGCGGCGAAGAAGGCAGCCAAGAAGGCAGCAGCCAAGCCGGCGGCAGCGAAGAAGACGTTGG TCAAGCCTGCAGCCAAGAAGGCGCCGGTCGCCAAGCAAACCGCGACCAGGCAGGCCGCAGTGAAGAAGGCCCCGCTCAAG AAGGCCGTGACCAAGACCGCGTTGAAGAAAGCCGCCAAGGTGACCAAGACCCCGGCCACGCGTGCCGTGGCAAAGACCAC CGCCGCGCGCAAGGCAGTGGGCAAGAAAGCGGCAAAGCGCGTCACGCGTTGA
Upstream 100 bases:
>100_bases GGCCGGGCGTAGCGTCCGCTTGATCCGATGCCTGTTCAGCATGTTGCGTGCCGTCGCGCATCGCCTAAGTTTCCCGCACT GACGCCCTTAAGGAGGGTCT
Downstream 100 bases:
>100_bases GGTTGTCACGCTGCGGCGCAGGGTGAGTTGCCTGGGCCGCTTAGCGTGAGACGCGTGCAGCGCACGCGCCATGTGCCATG AACCATGTGCAATGTCGAAA
Product: histone H1-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MSNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARKAVVKVEKNVARNAGTAASAV KRSVAKTKRSLAATKDAAKDKLVATKEAAKQKLTATKDVAKQTLTSTTQAAKQKLSSTSAAAKQKLTDTKANTRRKLETA KANARAEAAALNAKTAAKRAARKTAVATVNARTAAKKAAKKAAAKPAAAKKTLVKPAAKKAPVAKQTATRQAAVKKAPLK KAVTKTALKKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR
Sequences:
>Translated_283_residues MSNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARKAVVKVEKNVARNAGTAASAV KRSVAKTKRSLAATKDAAKDKLVATKEAAKQKLTATKDVAKQTLTSTTQAAKQKLSSTSAAAKQKLTDTKANTRRKLETA KANARAEAAALNAKTAAKRAARKTAVATVNARTAAKKAAKKAAAKPAAAKKTLVKPAAKKAPVAKQTATRQAAVKKAPLK KAVTKTALKKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR >Mature_282_residues SNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARKAVVKVEKNVARNAGTAASAVK RSVAKTKRSLAATKDAAKDKLVATKEAAKQKLTATKDVAKQTLTSTTQAAKQKLSSTSAAAKQKLTDTKANTRRKLETAK ANARAEAAALNAKTAAKRAARKTAVATVNARTAAKKAAKKAAAKPAAAKKTLVKPAAKKAPVAKQTATRQAAVKKAPLKK AVTKTALKKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28915; Mature: 28783
Theoretical pI: Translated: 11.82; Mature: 11.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 0.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARK CCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVKVEKNVARNAGTAASAVKRSVAKTKRSLAATKDAAKDKLVATKEAAKQKLTATKDVA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQTLTSTTQAAKQKLSSTSAAAKQKLTDTKANTRRKLETAKANARAEAAALNAKTAAKRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKTAVATVNARTAAKKAAKKAAAKPAAAKKTLVKPAAKKAPVAKQTATRQAAVKKAPLK HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH KAVTKTALKKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SNGNGVTATLSDAVDSVKSTATELTETIASTASEAVASVQEAAGTAVEEVKTQVAKARK CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AVVKVEKNVARNAGTAASAVKRSVAKTKRSLAATKDAAKDKLVATKEAAKQKLTATKDVA HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQTLTSTTQAAKQKLSSTSAAAKQKLTDTKANTRRKLETAKANARAEAAALNAKTAAKRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARKTAVATVNARTAAKKAAKKAAAKPAAAKKTLVKPAAKKAPVAKQTATRQAAVKKAPLK HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH KAVTKTALKKAAKVTKTPATRAVAKTTAARKAVGKKAAKRVTR HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA