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The map label for this gene is ybjD [C]

Identifier: 21244661

GI number: 21244661

Start: 4636552

End: 4638234

Strand: Reverse

Name: ybjD [C]

Synonym: XAC3942

Alternate gene names: 21244661

Gene position: 4638234-4636552 (Counterclockwise)

Preceding gene: 21244662

Following gene: 21244660

Centisome position: 89.62

GC content: 55.14

Gene sequence:

>1683_bases
GTGGGGGGATTACCGTTGGACTCGGACGATATCCATCGGCCGAAGACAGGATCGCCTAGCGGAAGTATCGTTTTCAAGTA
CATATTCCGAGGCTTGTGCTCCGACGATGAGGCTGACTTCATGAGTGCCCTGAAGCCTGCCAAAGACGGGCAGATGGAGG
CGCATATCACCATCAGCTTCTCCGAGGCAGACAAGACAGGGCGACTCAGAGCGAAGCGCTGGTGTGGAGACCATGACGAT
GTCGGCTTGACAGCGGACATGATGGAGAATCTTCGAGGGGTCTATCTTCAACCCCTACGCGACGCATCTCAAGCCCTTAG
GCCCGGCCGCATGAGCCAGCTGTCGCGACTGTTTCAGCTTCTCGTTGATGACAATGGCAAGATCGAGATCAATGGGGCAC
TAAAGCTCCTGGATGATGAGCTCAAAAAGAAGGCGCCAATTGTGAGCACCCACAAGGCGATAACCACCCGGCACTCGGAG
ATGCTGGGTCCGCAGCTTTCTCAGCTGCTTGAGCTCGGGGTTAGCGTCAGTGATTTTCAACGCCTGGCTTCGCGCCTCTC
TCTTACCGTTGATCTGTTCGAGCTTGAGCAGAACGGGCTCGGATTCAACAATCTAATCTTCATGGCGGTCGTGCTCAGCG
AGCTGACCAAGAACCCACAAGCCAGCTATCGAGGCCTGATCATTGAGGAGCCCGAGGCACATCTACATCCCCAATTGCAG
GCTGTGCTCTTGGGCTACTTTGAGACCATCAAGGCAGTGGACAAGGAGAAGCCTGTCCAACTGTTCGTTACCAGCCACTC
ACCCAACTTTGCCAGCATCGCCAATCTCGACAGTTTGACTTGCCTAGTCGACACCGGCATCAAGGTGGAGACGTTCTTTC
CGCGAGACATCAAGTTTGCTGTCGGAAAGCGCGAAAAGCTTGAGCGCTATTTGGACGTAACTCGGGCTGAGCTCTTTTTT
GCACGCCGCGCCATCCTGGTTGAAGGCGCTGCGGAGTTGGTTCTTGTCAGCGTGCTCGCAGAGAAGTGCGGCCACGATCT
ACGCAAGCATGGTGTCAGCCTCATCAGCGTTGAAGGCCTCAACTTCGACTCGTTCATTCCACTGTTCGGAGAGAATGCTC
TGAAGATTCCGGTCTCCGTGCTTACCGATGCGGACCCAACGGGTCCGAGCGAAGAGGATGAAGAGGCGGGGAGTGACGGT
AGCGTAGTAGCGGACGACCTTGCGTCGACAGATGACGCCTCTGGTGGAAAGAAGAAGGCGGCTCCTGTCTACCCTTCGAT
TGGTGACAAGGTGCAGCTGTCTGCAAACACCCTGAGTATGATCAAGTTCGAAGATTCATATCTCAAGGTCTTCCATGGGC
TGAAGACGCTTGAGTATGACTTGGCCTTATACGCCTGCAACCGCAAGATGATGCTTGCGGCGCTTAGCGAGCTTCACCCG
AAGATATCTGCAAGCCTGGCGAAGAAGGTCGACGCCGCTACGGGAGAGACAGAGAAGGCTCGCGTACTATTCAGCGGAAT
GTTCGAGAGGAAGAACGGAAACGTCCAGAAGGGGCGCTTTGCACAAGCTTTGGCGCACCTTATCGCTAAAGCGAAAGCCG
AAGATTTCATTGTCCCCGGGTACATCAAGTCTGCAGTTGAACACGCTTGCCAGCCTGGCCCGAAGAAGGGCGAGGACGAA
TGA

Upstream 100 bases:

>100_bases
GACGTACAACCACGAGCGCCCGAATATGGCGCTCGGCGGCATCACGCCTGCCATGAAGTTGGCGATGGCCGCTTAGCTCC
ACTTCTGGCGACCGCTAGAA

Downstream 100 bases:

>100_bases
GCACGGATACTCCTTCATTAGAACAGGGTGCGATCATCACGGCACCATTGCAGCCGATGTCGGTCATCGCTTGTGCGGGA
AGTGGTAAGACATTCACGGC

Product: hypothetical protein

Products: NA

Alternate protein names: ATP-Dependent Endonuclease Of OLD Family; SMC Domain-Containing Protein; Overcoming Lysogenization Defect Protein; RecF/RecN/SMC N Domain Protein; ATP-Dependent Endonuclease OLD Family; SMC Domain Protein; SMC Family Protein; ATP-Dependent Endonuclease; SMC Protein-Like; Pathogenesis Related Protein; Nucleoside Triphosphate Hydrolase Domain-Containing Protein; OLD Family-Like ATP-Dependent Endonuclease; P-Loop Containing Nucleoside Triphosphate Hydrolase Domain; P-Loop Containing Nucleoside Triphosphate Hydrolase; OLD Family Nuclease; Ypothetical Protein YbjD.; Endonuclease

Number of amino acids: Translated: 560; Mature: 559

Protein sequence:

>560_residues
MGGLPLDSDDIHRPKTGSPSGSIVFKYIFRGLCSDDEADFMSALKPAKDGQMEAHITISFSEADKTGRLRAKRWCGDHDD
VGLTADMMENLRGVYLQPLRDASQALRPGRMSQLSRLFQLLVDDNGKIEINGALKLLDDELKKKAPIVSTHKAITTRHSE
MLGPQLSQLLELGVSVSDFQRLASRLSLTVDLFELEQNGLGFNNLIFMAVVLSELTKNPQASYRGLIIEEPEAHLHPQLQ
AVLLGYFETIKAVDKEKPVQLFVTSHSPNFASIANLDSLTCLVDTGIKVETFFPRDIKFAVGKREKLERYLDVTRAELFF
ARRAILVEGAAELVLVSVLAEKCGHDLRKHGVSLISVEGLNFDSFIPLFGENALKIPVSVLTDADPTGPSEEDEEAGSDG
SVVADDLASTDDASGGKKKAAPVYPSIGDKVQLSANTLSMIKFEDSYLKVFHGLKTLEYDLALYACNRKMMLAALSELHP
KISASLAKKVDAATGETEKARVLFSGMFERKNGNVQKGRFAQALAHLIAKAKAEDFIVPGYIKSAVEHACQPGPKKGEDE

Sequences:

>Translated_560_residues
MGGLPLDSDDIHRPKTGSPSGSIVFKYIFRGLCSDDEADFMSALKPAKDGQMEAHITISFSEADKTGRLRAKRWCGDHDD
VGLTADMMENLRGVYLQPLRDASQALRPGRMSQLSRLFQLLVDDNGKIEINGALKLLDDELKKKAPIVSTHKAITTRHSE
MLGPQLSQLLELGVSVSDFQRLASRLSLTVDLFELEQNGLGFNNLIFMAVVLSELTKNPQASYRGLIIEEPEAHLHPQLQ
AVLLGYFETIKAVDKEKPVQLFVTSHSPNFASIANLDSLTCLVDTGIKVETFFPRDIKFAVGKREKLERYLDVTRAELFF
ARRAILVEGAAELVLVSVLAEKCGHDLRKHGVSLISVEGLNFDSFIPLFGENALKIPVSVLTDADPTGPSEEDEEAGSDG
SVVADDLASTDDASGGKKKAAPVYPSIGDKVQLSANTLSMIKFEDSYLKVFHGLKTLEYDLALYACNRKMMLAALSELHP
KISASLAKKVDAATGETEKARVLFSGMFERKNGNVQKGRFAQALAHLIAKAKAEDFIVPGYIKSAVEHACQPGPKKGEDE
>Mature_559_residues
GGLPLDSDDIHRPKTGSPSGSIVFKYIFRGLCSDDEADFMSALKPAKDGQMEAHITISFSEADKTGRLRAKRWCGDHDDV
GLTADMMENLRGVYLQPLRDASQALRPGRMSQLSRLFQLLVDDNGKIEINGALKLLDDELKKKAPIVSTHKAITTRHSEM
LGPQLSQLLELGVSVSDFQRLASRLSLTVDLFELEQNGLGFNNLIFMAVVLSELTKNPQASYRGLIIEEPEAHLHPQLQA
VLLGYFETIKAVDKEKPVQLFVTSHSPNFASIANLDSLTCLVDTGIKVETFFPRDIKFAVGKREKLERYLDVTRAELFFA
RRAILVEGAAELVLVSVLAEKCGHDLRKHGVSLISVEGLNFDSFIPLFGENALKIPVSVLTDADPTGPSEEDEEAGSDGS
VVADDLASTDDASGGKKKAAPVYPSIGDKVQLSANTLSMIKFEDSYLKVFHGLKTLEYDLALYACNRKMMLAALSELHPK
ISASLAKKVDAATGETEKARVLFSGMFERKNGNVQKGRFAQALAHLIAKAKAEDFIVPGYIKSAVEHACQPGPKKGEDE

Specific function: Unknown

COG id: COG3593

COG function: function code L; Predicted ATP-dependent endonuclease of the OLD family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61261; Mature: 61130

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGLPLDSDDIHRPKTGSPSGSIVFKYIFRGLCSDDEADFMSALKPAKDGQMEAHITISF
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEEEE
SEADKTGRLRAKRWCGDHDDVGLTADMMENLRGVYLQPLRDASQALRPGRMSQLSRLFQL
CCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LVDDNGKIEINGALKLLDDELKKKAPIVSTHKAITTRHSEMLGPQLSQLLELGVSVSDFQ
HHCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHH
RLASRLSLTVDLFELEQNGLGFNNLIFMAVVLSELTKNPQASYRGLIIEEPEAHLHPQLQ
HHHHHHHHEEEEEEHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEECCHHHHCHHHH
AVLLGYFETIKAVDKEKPVQLFVTSHSPNFASIANLDSLTCLVDTGIKVETFFPRDIKFA
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHCCCCCEEEEEECCCEEEEECCCCHHHH
VGKREKLERYLDVTRAELFFARRAILVEGAAELVLVSVLAEKCGHDLRKHGVSLISVEGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCEEEEEECC
NFDSFIPLFGENALKIPVSVLTDADPTGPSEEDEEAGSDGSVVADDLASTDDASGGKKKA
CCCCCCHHCCCCCEEEEHEEECCCCCCCCCCCHHHCCCCCCEEEHHHCCCCCCCCCCCCC
APVYPSIGDKVQLSANTLSMIKFEDSYLKVFHGLKTLEYDLALYACNRKMMLAALSELHP
CCCCCCCCCEEEEECCEEEEEEECHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHCH
KISASLAKKVDAATGETEKARVLFSGMFERKNGNVQKGRFAQALAHLIAKAKAEDFIVPG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH
YIKSAVEHACQPGPKKGEDE
HHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GGLPLDSDDIHRPKTGSPSGSIVFKYIFRGLCSDDEADFMSALKPAKDGQMEAHITISF
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEEEE
SEADKTGRLRAKRWCGDHDDVGLTADMMENLRGVYLQPLRDASQALRPGRMSQLSRLFQL
CCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LVDDNGKIEINGALKLLDDELKKKAPIVSTHKAITTRHSEMLGPQLSQLLELGVSVSDFQ
HHCCCCEEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHH
RLASRLSLTVDLFELEQNGLGFNNLIFMAVVLSELTKNPQASYRGLIIEEPEAHLHPQLQ
HHHHHHHHEEEEEEHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEECCHHHHCHHHH
AVLLGYFETIKAVDKEKPVQLFVTSHSPNFASIANLDSLTCLVDTGIKVETFFPRDIKFA
HHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHCCCCCEEEEEECCCEEEEECCCCHHHH
VGKREKLERYLDVTRAELFFARRAILVEGAAELVLVSVLAEKCGHDLRKHGVSLISVEGL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCEEEEEECC
NFDSFIPLFGENALKIPVSVLTDADPTGPSEEDEEAGSDGSVVADDLASTDDASGGKKKA
CCCCCCHHCCCCCEEEEHEEECCCCCCCCCCCHHHCCCCCCEEEHHHCCCCCCCCCCCCC
APVYPSIGDKVQLSANTLSMIKFEDSYLKVFHGLKTLEYDLALYACNRKMMLAALSELHP
CCCCCCCCCEEEEECCEEEEEEECHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHCH
KISASLAKKVDAATGETEKARVLFSGMFERKNGNVQKGRFAQALAHLIAKAKAEDFIVPG
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH
YIKSAVEHACQPGPKKGEDE
HHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA