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The map label for this gene is yebA [H]

Identifier: 21244617

GI number: 21244617

Start: 4583700

End: 4585118

Strand: Direct

Name: yebA [H]

Synonym: XAC3898

Alternate gene names: 21244617

Gene position: 4583700-4585118 (Clockwise)

Preceding gene: 21244615

Following gene: 77748746

Centisome position: 88.56

GC content: 64.62

Gene sequence:

>1419_bases
ATGCAGAACTCAGAGCAGGGCCGTGCACGCAAGCGGCGCTTTCACGAACGCCTCCACGTCCTCCACGACACTGCACTGCA
TCGAAAGCTCAAGGCGCATCTGCCGGCGGCATTCAATGACCGCTGGACACGTCGCCACTGGATCCACGCCAGCCTGTTCG
CCACCATCGGCGCGCTGGTGGCCACGATCGTGCCGGGTTTTTCCAACGCCATCGACACACCGCTTTCCAGCCATTCCACG
CTGGCGTTGCCGTTGCCGCCGCTGATTCCCAGCCGCAAGCAGCTGGCGCCGAGCACCGATTGGGAAATTCTGCAGGTCAA
GCCGGGCCAGACGCTGAGTACCTTGTTCGGCGAGCTGGGAATCCCGACCACGGTGATGTACCAGGTATTGGCGCATCCGG
GGACCAAGGAGGTGCTGACCAAGCTGCGTCCGGGCACCGAGATCGCCTTCGACATGCCGACGCGCGGGCAACTGCGCGCA
TTGCGCTTCGATCGCGACGACAGTCATCGGGTGGAACTGCGCCTGCTGGGCGACGCCGTGCGCGAGAACGTGACCGAGCG
GGCGACCACCACGCGCACAGTGGTTGCCAGCGGGGAGATCAGCAGTTCGTTGTATGCATCGGCCGGCAAATCCGGATTGT
CGCCGGCGGCGGTGGCGATCATGACCGACGAGATCTTCAAGTACGACATCGACTTCGACAAGGATCTGCAGCCCGGCGAC
CGTTTCAGCGTGGTCATGGATGAAACCTGGCGCGAAGGCGAGCGGATCAGCACCGGCGACATCCTGGCGGCGACGTTCAC
CACCGGCGGCAAGACCTATACGGGGTTTCGCTTCGAGCGTGCCGGCAAACCGGCCGAGTACTTCGACATCAATGGCCGCC
CGCTCAAGAAGAGCTTTATCCGCATGCCGGTGGCCTATAGCCGGATCAGCTCCACCTTCGGTGCGCGCAAGCATCCGGTG
CTGGGCACCATGCGCATGCACAAGGGTGTGGACTATGCGGCCGCCTCGGGCACGCCGATCATGGCAGCCGGCGATGCGCG
GGTGGTGTTTGTCGGGACCCAACGCGGTTATGGCAACGTGGTGATCCTGGATCACGGCAAGAACTACAGCACGCTGTACG
GGCACATGTCGCGCTTTGGCAAGATCAAGGCCGGGCAGCGCATCAACCAGGGCACGGTGATCGGCTATGTCGGCATGACC
GGCCTGGCGACCGGCCCGCATCTGCATTACGAATTCCGCGTGGGCGGACAGCAGCGCAATCCGATGTCGGTGACGATGCC
GCCGCCGGAGCCGCTGCAGGGCGTCGAACTGGCGGCGTTCCGCGCGCAGACGGCGCCGGCCATGGCTCGCATCGAGGGCA
TGGAGAAGCTGATCTACGCCGACGCCGGCAAGCCGGCCAAGGGCAAGTCGCGCAGTTGA

Upstream 100 bases:

>100_bases
TGAAAATAATGAACAGGCTCAATGGTTTGACGCGCTGTTACAGGCTGTCTATGGTACCGGCGATTGGGCTCGCACTTCGA
GCCAGCGAGGAATTTGAACG

Downstream 100 bases:

>100_bases
GCGCCTGCGGCTGGTAACTGCGTCAGCTGCGTCGCGGCTGCGCAGGCGGGTGGCGCGGCAGGGGTTGGGCGTCCCTCCAG
CCGTGTCGCATGGTCGTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MQNSEQGRARKRRFHERLHVLHDTALHRKLKAHLPAAFNDRWTRRHWIHASLFATIGALVATIVPGFSNAIDTPLSSHST
LALPLPPLIPSRKQLAPSTDWEILQVKPGQTLSTLFGELGIPTTVMYQVLAHPGTKEVLTKLRPGTEIAFDMPTRGQLRA
LRFDRDDSHRVELRLLGDAVRENVTERATTTRTVVASGEISSSLYASAGKSGLSPAAVAIMTDEIFKYDIDFDKDLQPGD
RFSVVMDETWREGERISTGDILAATFTTGGKTYTGFRFERAGKPAEYFDINGRPLKKSFIRMPVAYSRISSTFGARKHPV
LGTMRMHKGVDYAAASGTPIMAAGDARVVFVGTQRGYGNVVILDHGKNYSTLYGHMSRFGKIKAGQRINQGTVIGYVGMT
GLATGPHLHYEFRVGGQQRNPMSVTMPPPEPLQGVELAAFRAQTAPAMARIEGMEKLIYADAGKPAKGKSRS

Sequences:

>Translated_472_residues
MQNSEQGRARKRRFHERLHVLHDTALHRKLKAHLPAAFNDRWTRRHWIHASLFATIGALVATIVPGFSNAIDTPLSSHST
LALPLPPLIPSRKQLAPSTDWEILQVKPGQTLSTLFGELGIPTTVMYQVLAHPGTKEVLTKLRPGTEIAFDMPTRGQLRA
LRFDRDDSHRVELRLLGDAVRENVTERATTTRTVVASGEISSSLYASAGKSGLSPAAVAIMTDEIFKYDIDFDKDLQPGD
RFSVVMDETWREGERISTGDILAATFTTGGKTYTGFRFERAGKPAEYFDINGRPLKKSFIRMPVAYSRISSTFGARKHPV
LGTMRMHKGVDYAAASGTPIMAAGDARVVFVGTQRGYGNVVILDHGKNYSTLYGHMSRFGKIKAGQRINQGTVIGYVGMT
GLATGPHLHYEFRVGGQQRNPMSVTMPPPEPLQGVELAAFRAQTAPAMARIEGMEKLIYADAGKPAKGKSRS
>Mature_472_residues
MQNSEQGRARKRRFHERLHVLHDTALHRKLKAHLPAAFNDRWTRRHWIHASLFATIGALVATIVPGFSNAIDTPLSSHST
LALPLPPLIPSRKQLAPSTDWEILQVKPGQTLSTLFGELGIPTTVMYQVLAHPGTKEVLTKLRPGTEIAFDMPTRGQLRA
LRFDRDDSHRVELRLLGDAVRENVTERATTTRTVVASGEISSSLYASAGKSGLSPAAVAIMTDEIFKYDIDFDKDLQPGD
RFSVVMDETWREGERISTGDILAATFTTGGKTYTGFRFERAGKPAEYFDINGRPLKKSFIRMPVAYSRISSTFGARKHPV
LGTMRMHKGVDYAAASGTPIMAAGDARVVFVGTQRGYGNVVILDHGKNYSTLYGHMSRFGKIKAGQRINQGTVIGYVGMT
GLATGPHLHYEFRVGGQQRNPMSVTMPPPEPLQGVELAAFRAQTAPAMARIEGMEKLIYADAGKPAKGKSRS

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=341, Percent_Identity=31.9648093841642, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI87082174, Length=103, Percent_Identity=37.8640776699029, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789099, Length=116, Percent_Identity=33.6206896551724, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082297, Length=95, Percent_Identity=35.7894736842105, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 51880; Mature: 51880

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNSEQGRARKRRFHERLHVLHDTALHRKLKAHLPAAFNDRWTRRHWIHASLFATIGALV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATIVPGFSNAIDTPLSSHSTLALPLPPLIPSRKQLAPSTDWEILQVKPGQTLSTLFGELG
HHHHCCCCHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHCC
IPTTVMYQVLAHPGTKEVLTKLRPGTEIAFDMPTRGQLRALRFDRDDSHRVELRLLGDAV
CCHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEEHHHH
RENVTERATTTRTVVASGEISSSLYASAGKSGLSPAAVAIMTDEIFKYDIDFDKDLQPGD
HHHHHHHHCCEEEEEECCCCCHHHHHHCCCCCCCCEEEEEEEHHHEEEECCCCCCCCCCC
RFSVVMDETWREGERISTGDILAATFTTGGKTYTGFRFERAGKPAEYFDINGRPLKKSFI
CEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEECEEEECCCCCCCEEECCCCCHHHHHH
RMPVAYSRISSTFGARKHPVLGTMRMHKGVDYAAASGTPIMAAGDARVVFVGTQRGYGNV
HCCHHHHHHHHHCCCCCCCCEEHHHHHCCCCEECCCCCEEEEECCEEEEEEECCCCCCCE
VILDHGKNYSTLYGHMSRFGKIKAGQRINQGTVIGYVGMTGLATGPHLHYEFRVGGQQRN
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCC
PMSVTMPPPEPLQGVELAAFRAQTAPAMARIEGMEKLIYADAGKPAKGKSRS
CEEEECCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHEEEECCCCCCCCCCCC
>Mature Secondary Structure
MQNSEQGRARKRRFHERLHVLHDTALHRKLKAHLPAAFNDRWTRRHWIHASLFATIGALV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
ATIVPGFSNAIDTPLSSHSTLALPLPPLIPSRKQLAPSTDWEILQVKPGQTLSTLFGELG
HHHHCCCCHHHCCCCCCCCEEEECCCCCCCCHHHCCCCCCCEEEEECCCCHHHHHHHHCC
IPTTVMYQVLAHPGTKEVLTKLRPGTEIAFDMPTRGQLRALRFDRDDSHRVELRLLGDAV
CCHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCCEEEEEECCCCCCEEEEEEEHHHH
RENVTERATTTRTVVASGEISSSLYASAGKSGLSPAAVAIMTDEIFKYDIDFDKDLQPGD
HHHHHHHHCCEEEEEECCCCCHHHHHHCCCCCCCCEEEEEEEHHHEEEECCCCCCCCCCC
RFSVVMDETWREGERISTGDILAATFTTGGKTYTGFRFERAGKPAEYFDINGRPLKKSFI
CEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEECEEEECCCCCCCEEECCCCCHHHHHH
RMPVAYSRISSTFGARKHPVLGTMRMHKGVDYAAASGTPIMAAGDARVVFVGTQRGYGNV
HCCHHHHHHHHHCCCCCCCCEEHHHHHCCCCEECCCCCEEEEECCEEEEEEECCCCCCCE
VILDHGKNYSTLYGHMSRFGKIKAGQRINQGTVIGYVGMTGLATGPHLHYEFRVGGQQRN
EEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCCCC
PMSVTMPPPEPLQGVELAAFRAQTAPAMARIEGMEKLIYADAGKPAKGKSRS
CEEEECCCCCCCCCCEEEHHHHHCCHHHHHHHHHHHEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]