Click here to switch to the map view.

The map label for this gene is nucA

Identifier: 21244494

GI number: 21244494

Start: 4446384

End: 4447196

Strand: Direct

Name: nucA

Synonym: XAC3769

Alternate gene names: NA

Gene position: 4446384-4447196 (Clockwise)

Preceding gene: 21244493

Following gene: 77748741

Centisome position: 85.91

GC content: 61.01

Gene sequence:

>813_bases
TTGTCCAACGTCGATGTGCTGATGCATCGCGACGGCGGTTTCGTGCGTCCGATGATTTCAAGGAGATTGACTCCCATGCG
CTTGAAGACCTTTTTCGTCGTTCTGCTTCTCACCACCTTCAGTGCCGCTGCACAGGCCCAAGTGGTGACCCTCAACAAGG
GCGGCTATACGCTGACCTACGACTGCACCAACCGCACCGCACTGCGTTACGAATACGTGCTGCAGGCCGACACAGGCTCG
GCTGCACGCCCGTCCAGCTTCAATCTGGATACCGAATTGCCCAGCGGCTGTGCCGGGCAGACCTCCACGGCCTCGTATGC
CAGCGTGCGTTCCGGCTATGACCGCGGACATCTGGTGACGTCCAACCACATGGACTACAACGCGACCTACATCCGCCGCG
CCAACCTCATGAGCAACATCGTGCCGCAGGTGGCCACCTTCAATCAGGGCATCTGGGTGCAGGCAGAGAACGTGGCCGAG
TGCTATCGGGACATCGCCAGCGTGCAGGTGTACGGCGGAGTGATCTACAGCGACACCAGCAACGATTACTTCCTCAGCAG
CCACGGCATCCGCACGCCGGATTTCTTCTGGAAGACCGTCATCACCGCCAACCCGAGCGGCGGCTCGCGCGCCATCAGCT
GGCTGATTCCCAATAGTGCCAACCTAGGCTCGCTGGACAGCTATATCGTCAGCATCGACGAACTCGAAGACCTCTACGGC
GCCAGCACCATCGGCATCAGCGCACCGGCGGCTGTCAAAGCCATGCTGCCGTCCACCACCTGGCCGCAGCCGAGCAATTG
CGACCTGGGCTGA

Upstream 100 bases:

>100_bases
TGCACATTCCTTGGGCATACGTCACCAACAAGCAACATTTGCATGCGATAGCTGTAGCGCTCGCCACGCAGCGGGCCCTC
TGTTCTCCCCTTAGCGCGCG

Downstream 100 bases:

>100_bases
GCCGCCCTGCATCCACGGCATGACGCCCAGCCCGGCCTGTGCCGGGTTGGGTCACGGCGTGGCGAGGGATGCGTGCATGG
CGTCATGCCGCGTGTGACAG

Product: endonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MSNVDVLMHRDGGFVRPMISRRLTPMRLKTFFVVLLLTTFSAAAQAQVVTLNKGGYTLTYDCTNRTALRYEYVLQADTGS
AARPSSFNLDTELPSGCAGQTSTASYASVRSGYDRGHLVTSNHMDYNATYIRRANLMSNIVPQVATFNQGIWVQAENVAE
CYRDIASVQVYGGVIYSDTSNDYFLSSHGIRTPDFFWKTVITANPSGGSRAISWLIPNSANLGSLDSYIVSIDELEDLYG
ASTIGISAPAAVKAMLPSTTWPQPSNCDLG

Sequences:

>Translated_270_residues
MSNVDVLMHRDGGFVRPMISRRLTPMRLKTFFVVLLLTTFSAAAQAQVVTLNKGGYTLTYDCTNRTALRYEYVLQADTGS
AARPSSFNLDTELPSGCAGQTSTASYASVRSGYDRGHLVTSNHMDYNATYIRRANLMSNIVPQVATFNQGIWVQAENVAE
CYRDIASVQVYGGVIYSDTSNDYFLSSHGIRTPDFFWKTVITANPSGGSRAISWLIPNSANLGSLDSYIVSIDELEDLYG
ASTIGISAPAAVKAMLPSTTWPQPSNCDLG
>Mature_269_residues
SNVDVLMHRDGGFVRPMISRRLTPMRLKTFFVVLLLTTFSAAAQAQVVTLNKGGYTLTYDCTNRTALRYEYVLQADTGSA
ARPSSFNLDTELPSGCAGQTSTASYASVRSGYDRGHLVTSNHMDYNATYIRRANLMSNIVPQVATFNQGIWVQAENVAEC
YRDIASVQVYGGVIYSDTSNDYFLSSHGIRTPDFFWKTVITANPSGGSRAISWLIPNSANLGSLDSYIVSIDELEDLYGA
STIGISAPAAVKAMLPSTTWPQPSNCDLG

Specific function: Unknown

COG id: COG1864

COG function: function code F; DNA/RNA endonuclease G, NUC1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA/RNA non-specific endonuclease family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018524
- InterPro:   IPR001604
- InterPro:   IPR020821 [H]

Pfam domain/function: PF01223 Endonuclease_NS [H]

EC number: NA

Molecular weight: Translated: 29406; Mature: 29275

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNVDVLMHRDGGFVRPMISRRLTPMRLKTFFVVLLLTTFSAAAQAQVVTLNKGGYTLTY
CCCCEEEEECCCCEECHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEE
DCTNRTALRYEYVLQADTGSAARPSSFNLDTELPSGCAGQTSTASYASVRSGYDRGHLVT
ECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEE
SNHMDYNATYIRRANLMSNIVPQVATFNQGIWVQAENVAECYRDIASVQVYGGVIYSDTS
CCCCCCCHHEEEHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHEEEECCEEEECCC
NDYFLSSHGIRTPDFFWKTVITANPSGGSRAISWLIPNSANLGSLDSYIVSIDELEDLYG
CCEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHEEEHHHHHHHHC
ASTIGISAPAAVKAMLPSTTWPQPSNCDLG
CCCCCCCCCHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNVDVLMHRDGGFVRPMISRRLTPMRLKTFFVVLLLTTFSAAAQAQVVTLNKGGYTLTY
CCCEEEEECCCCEECHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEE
DCTNRTALRYEYVLQADTGSAARPSSFNLDTELPSGCAGQTSTASYASVRSGYDRGHLVT
ECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEE
SNHMDYNATYIRRANLMSNIVPQVATFNQGIWVQAENVAECYRDIASVQVYGGVIYSDTS
CCCCCCCHHEEEHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHEEEECCEEEECCC
NDYFLSSHGIRTPDFFWKTVITANPSGGSRAISWLIPNSANLGSLDSYIVSIDELEDLYG
CCEEEECCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCHHHEEEHHHHHHHHC
ASTIGISAPAAVKAMLPSTTWPQPSNCDLG
CCCCCCCCCHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]