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The map label for this gene is rsuA [H]

Identifier: 21244403

GI number: 21244403

Start: 4355598

End: 4356311

Strand: Reverse

Name: rsuA [H]

Synonym: XAC3678

Alternate gene names: 21244403

Gene position: 4356311-4355598 (Counterclockwise)

Preceding gene: 21244404

Following gene: 21244402

Centisome position: 84.17

GC content: 66.95

Gene sequence:

>714_bases
ATGAAGCTGGTCAAACACATCGCCAATCTCGGCTATGGCAGCCGCAAGCAGGTCACCCAGCTGTTCCGGCAGGGCGCGAT
CACCGATGCGCAAGGCGAGGTGCTGTATGCCGACGACCAGGTGGAGCACGACGCCATCCGCATCGATGGCGAACCGCTCG
ATCCGCCGGCGGGCTTGAGCCTGTTGCTGCACAAACCCAGCGGCTACACCTGCTCGACCAAGGACACCGGCCGGCTGATC
TACGAATTGCTGCCGCCACGCTTCCGCCTGCGTGCGCCGGTGTTGGCGCCAGTGGGTCGGCTGGACCGCGAGACCAGCGG
CCTGCTGTTGATGACCGACGACGGCGCGCTGCTGCATCGGATCATTTCGCCCAAATCCGCCCTGGACAAGGTGTACGACA
TCACTCTGGCCGAGGACCTGCGTGGCGACGAGGCCGCGCTGTTCGCCAGCGGCAGCTTGCTGCTGGAAGGCGAAACCAAG
CCGCTGCTGCCGGCCGAATTGGAGGTGCTTGGCCCACGCCAGGCGCGGCTGACCCTGCACGAAGGCCGCTATCACCAGGT
GCGGCGCATGTTCGCTGCCGCCGGTAGCCACGTGGTCGCGCTGCACCGCAGCCGCATCGGCGGCCTGTCGCTGGATGGAT
TGCCCTCGGGGCAATGGCGTGCGCTGGAAGCGAGCGATCTTGAGGTGTTGTTCGGCCGCGGCGCCGCGGCATGA

Upstream 100 bases:

>100_bases
ACGAACAGGTGCTCAACGACAGTTTCGGGCAGGTACGCGTGGCTGCCGAACGCGATGGGTTCAAGCTGATCGCGGCGATC
CGCGGCCGCGGAGCGCGCCC

Downstream 100 bases:

>100_bases
GCCACAGTGCAGCGCTGCCGTTTCGCACGCAGGCGGTGATCTTCGACATGGATGGCTTGATGCTCGATAGCGAGCGCGCC
ATCACGGCCTGCCTGGCGCA

Product: ribosomal small subunit pseudouridylate synthase

Products: pseudouridine 5'-phosphate; H2O [C]

Alternate protein names: 16S pseudouridine 516 synthase; 16S pseudouridylate 516 synthase; rRNA pseudouridylate synthase A; rRNA-uridine isomerase A [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLSLLLHKPSGYTCSTKDTGRLI
YELLPPRFRLRAPVLAPVGRLDRETSGLLLMTDDGALLHRIISPKSALDKVYDITLAEDLRGDEAALFASGSLLLEGETK
PLLPAELEVLGPRQARLTLHEGRYHQVRRMFAAAGSHVVALHRSRIGGLSLDGLPSGQWRALEASDLEVLFGRGAAA

Sequences:

>Translated_237_residues
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLSLLLHKPSGYTCSTKDTGRLI
YELLPPRFRLRAPVLAPVGRLDRETSGLLLMTDDGALLHRIISPKSALDKVYDITLAEDLRGDEAALFASGSLLLEGETK
PLLPAELEVLGPRQARLTLHEGRYHQVRRMFAAAGSHVVALHRSRIGGLSLDGLPSGQWRALEASDLEVLFGRGAAA
>Mature_237_residues
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLSLLLHKPSGYTCSTKDTGRLI
YELLPPRFRLRAPVLAPVGRLDRETSGLLLMTDDGALLHRIISPKSALDKVYDITLAEDLRGDEAALFASGSLLLEGETK
PLLPAELEVLGPRQARLTLHEGRYHQVRRMFAAAGSHVVALHRSRIGGLSLDGLPSGQWRALEASDLEVLFGRGAAA

Specific function: Responsible for synthesis of pseudouridine from uracil- 516 in 16S ribosomal RNA [H]

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788510, Length=191, Percent_Identity=47.1204188481675, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI1790453, Length=236, Percent_Identity=29.2372881355932, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1787524, Length=249, Percent_Identity=32.1285140562249, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI87081838, Length=143, Percent_Identity=34.965034965035, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: 4.2.1.70 [C]

Molecular weight: Translated: 25767; Mature: 25767

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLS
CHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCE
LLLHKPSGYTCSTKDTGRLIYELLPPRFRLRAPVLAPVGRLDRETSGLLLMTDDGALLHR
EEEECCCCCEECCCCHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCHHHHH
IISPKSALDKVYDITLAEDLRGDEAALFASGSLLLEGETKPLLPAELEVLGPRQARLTLH
HHCCHHHHHHHHEEEEHHHCCCCCEEEEECCCEEEECCCCCCCCCHHEEECCCCEEEEEE
EGRYHQVRRMFAAAGSHVVALHRSRIGGLSLDGLPSGQWRALEASDLEVLFGRGAAA
CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCC
>Mature Secondary Structure
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLS
CHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCE
LLLHKPSGYTCSTKDTGRLIYELLPPRFRLRAPVLAPVGRLDRETSGLLLMTDDGALLHR
EEEECCCCCEECCCCHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCEEEEECCCHHHHH
IISPKSALDKVYDITLAEDLRGDEAALFASGSLLLEGETKPLLPAELEVLGPRQARLTLH
HHCCHHHHHHHHEEEEHHHCCCCCEEEEECCCEEEECCCCCCCCCHHEEECCCCEEEEEE
EGRYHQVRRMFAAAGSHVVALHRSRIGGLSLDGLPSGQWRALEASDLEVLFGRGAAA
CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: uracil; D-ribose phosphate [C]

Specific reaction: uracil + D-ribose phosphate = pseudouridine 5'-phosphate + H2O [C]

General reaction: addition of H2O; elimination of H2O; C-O bond cleavage [C]

Inhibitor: 1-(Tetrahydro-2-furanyl)-5-fluorouracil; 5-fluorouracil [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]