| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is sam [H]
Identifier: 21244395
GI number: 21244395
Start: 4348060
End: 4348956
Strand: Reverse
Name: sam [H]
Synonym: XAC3670
Alternate gene names: 21244395
Gene position: 4348956-4348060 (Counterclockwise)
Preceding gene: 21244402
Following gene: 21244394
Centisome position: 84.03
GC content: 69.12
Gene sequence:
>897_bases ATGCCCACCACCCGCTCCCCGCTTCCCGCCATCGCCTGGATGGTGGCCGCCGTTGCCTGTTTCTCGCTGATGGATGCGGG AATGAAGCTGCTCTCGGCGCATTACCCGCCGCTGCAGGTCACCTTGTTGCGCGGCGGCGCCTCGTTGCCGTTCGTGCTGG TGTGGGTGTTCGCCACCGCCGGGCCGCGGGCGATCGTGCCGGTGCGCTGGGGACTGCATCTGCTGCGTGGGGTGCTGGGC ATGGTGATGATCGGCTGCTTCGTCTTTGGCATCAAACGTATGCCCTTGTCCACCACCTACACGCTGTATTTCGTGGCGCC GCTGCTGGTGGCCGCGCTGTCGGTGCCGCTGCTGGGCGAGCATGTCGGCCCGCGCCGCTGGACCGCCATTGGCATTGGCC TGGTCGGGGTGATCGTGGTGCTGCGCCCGGGCGTGGACGGGCTGATCTCGCTGCCCGGGCTGATGGTGTTGCTGGCCGCC ACTGCCTATGCCGTCGCGGCGGTCACCGTGAGCCTGTTGACCCGCACCGACACCCCGCAGGCAATGGTGGTGTGGTTCTT GCTGTTCATGGCCATCGGCGCCGGGTTGCTGGCCATCCCCGGCTGGGTGCCGCTACAGGCCGGGCACGCCGGGCTGATCG CCGGCATGGGCCTGGCCGGTGCGCTGGGCCAGGTTGCGCTGACCCAGGCCTTCATGCGCGGCGAGGCCTCGATGATCGCC CCGCTGGAATACACCGGTCTGGTCTGGGTGATCGGCTGGGACTGGCTGCTGTGGCAGACCCTGCCCGACAGCTGGACCTG GACCGGCGCGGGCATCATCGTCGCCAGCGGCCTGTATTTGTTGCGCCGGGAGCGGATACGGCAGGCTGACCGTCCGCCGC CGCTGGATAGGCCGTGA
Upstream 100 bases:
>100_bases TCCTGCAATTGAAAAACAGCCGCCATTCTAGGCCATCGTGCCGCGCCGGCCGTCATGCCGGCATTGGCGGGCGTGCCAGT GCCGCGGCGATAATGCGCGC
Downstream 100 bases:
>100_bases TTGGGAATTCGGGATTGGGGATTGGGGATTCGTCAAAGCAGGGCGCGCCTGCTCTGACGAGTCCCAGATCTAGGCCTTGC CAGCGTTAGGGATTGGAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MPTTRSPLPAIAWMVAAVACFSLMDAGMKLLSAHYPPLQVTLLRGGASLPFVLVWVFATAGPRAIVPVRWGLHLLRGVLG MVMIGCFVFGIKRMPLSTTYTLYFVAPLLVAALSVPLLGEHVGPRRWTAIGIGLVGVIVVLRPGVDGLISLPGLMVLLAA TAYAVAAVTVSLLTRTDTPQAMVVWFLLFMAIGAGLLAIPGWVPLQAGHAGLIAGMGLAGALGQVALTQAFMRGEASMIA PLEYTGLVWVIGWDWLLWQTLPDSWTWTGAGIIVASGLYLLRRERIRQADRPPPLDRP
Sequences:
>Translated_298_residues MPTTRSPLPAIAWMVAAVACFSLMDAGMKLLSAHYPPLQVTLLRGGASLPFVLVWVFATAGPRAIVPVRWGLHLLRGVLG MVMIGCFVFGIKRMPLSTTYTLYFVAPLLVAALSVPLLGEHVGPRRWTAIGIGLVGVIVVLRPGVDGLISLPGLMVLLAA TAYAVAAVTVSLLTRTDTPQAMVVWFLLFMAIGAGLLAIPGWVPLQAGHAGLIAGMGLAGALGQVALTQAFMRGEASMIA PLEYTGLVWVIGWDWLLWQTLPDSWTWTGAGIIVASGLYLLRRERIRQADRPPPLDRP >Mature_297_residues PTTRSPLPAIAWMVAAVACFSLMDAGMKLLSAHYPPLQVTLLRGGASLPFVLVWVFATAGPRAIVPVRWGLHLLRGVLGM VMIGCFVFGIKRMPLSTTYTLYFVAPLLVAALSVPLLGEHVGPRRWTAIGIGLVGVIVVLRPGVDGLISLPGLMVLLAAT AYAVAAVTVSLLTRTDTPQAMVVWFLLFMAIGAGLLAIPGWVPLQAGHAGLIAGMGLAGALGQVALTQAFMRGEASMIAP LEYTGLVWVIGWDWLLWQTLPDSWTWTGAGIIVASGLYLLRRERIRQADRPPPLDRP
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6324991, Length=285, Percent_Identity=24.5614035087719, Blast_Score=72, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31817; Mature: 31686
Theoretical pI: Translated: 10.48; Mature: 10.48
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPTTRSPLPAIAWMVAAVACFSLMDAGMKLLSAHYPPLQVTLLRGGASLPFVLVWVFATA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCC GPRAIVPVRWGLHLLRGVLGMVMIGCFVFGIKRMPLSTTYTLYFVAPLLVAALSVPLLGE CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHC HVGPRRWTAIGIGLVGVIVVLRPGVDGLISLPGLMVLLAATAYAVAAVTVSLLTRTDTPQ CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH AMVVWFLLFMAIGAGLLAIPGWVPLQAGHAGLIAGMGLAGALGQVALTQAFMRGEASMIA HHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCEEC PLEYTGLVWVIGWDWLLWQTLPDSWTWTGAGIIVASGLYLLRRERIRQADRPPPLDRP CEECCCEEEEEEHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure PTTRSPLPAIAWMVAAVACFSLMDAGMKLLSAHYPPLQVTLLRGGASLPFVLVWVFATA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCC GPRAIVPVRWGLHLLRGVLGMVMIGCFVFGIKRMPLSTTYTLYFVAPLLVAALSVPLLGE CCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHC HVGPRRWTAIGIGLVGVIVVLRPGVDGLISLPGLMVLLAATAYAVAAVTVSLLTRTDTPQ CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH AMVVWFLLFMAIGAGLLAIPGWVPLQAGHAGLIAGMGLAGALGQVALTQAFMRGEASMIA HHHHHHHHHHHHCCCHHHCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCEEC PLEYTGLVWVIGWDWLLWQTLPDSWTWTGAGIIVASGLYLLRRERIRQADRPPPLDRP CEECCCEEEEEEHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA