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The map label for this gene is atpD [H]

Identifier: 21244374

GI number: 21244374

Start: 4327652

End: 4329058

Strand: Reverse

Name: atpD [H]

Synonym: XAC3649

Alternate gene names: 21244374

Gene position: 4329058-4327652 (Counterclockwise)

Preceding gene: 21244375

Following gene: 21244373

Centisome position: 83.64

GC content: 63.54

Gene sequence:

>1407_bases
ATGAGTCAGGGCAAGATCGTTCAGATCATCGGCGCGGTCGTCGACGTCGAATTCCCGCGCAATGAAGTGCCGAAGGTGTA
TCACGCGCTGAAGGTCGACGGCACCGAAATCACCCTGGAAGTGCAGCAGCAGCTCGGCGACGGCGTCGTGCGCACGATTG
CGCTCGGCTCCACCGACGGCCTGAAGCGCAACCTGGTCGCCACCAACACCGAACGCGCCATCTCGGTGCCGGTCGGCGCC
GGTACGCTGGGCCGCATCATGGACGTGCTGGGTCGCCCGATCGACGAAGCTGGCGACGTGCAGGCCTCGGACCATTGGGA
AATCCATCGCGGCGCACCGTCGTATGAAGACCAGTCGTCCAGCACCGAATTGCTGGAAACCGGCATCAAGGTCATCGACC
TGATGTGCCCGTTCGCCAAGGGCGGCAAGGTCGGCCTGTTCGGCGGTGCCGGCGTCGGCAAGACCGTCAACATGATGGAA
CTGATCAACAACATCGCCAAGGCGCACAGCGGCTTGTCCGTGTTCGCCGGCGTGGGCGAGCGTACCCGCGAGGGCAACGA
CTTCTACCACGAGATGAAGGACTCCAACGTCCTGGACAAGGTGGCGATGGTGTACGGCCAGATGAACGAGCCGCCGGGCA
ACCGTCTGCGCGTGGCGTTGACCGGCCTGACCATGGCCGAGTACTTCCGCGACGAGAAGGACGCCAGCGGTAAGGGCAAG
GACGTGCTGCTGTTCGTCGACAACATCTACCGCTACACGCTGGCCGGTACCGAAGTGTCCGCGCTGCTCGGCCGTATGCC
GTCGGCCGTGGGCTACCAGCCGACCCTGGCCGAAGAGATGGGCGTGCTGCAGGAGCGCATCACCTCGACCAAGAGCGGTT
CGATCACCTCGATCCAGGCCGTGTACGTGCCCGCGGACGACCTGACCGACCCGTCGCCGGCGACCACCTTCGCCCACTTG
GACTCGACCGTTACGCTGAGCCGTAACATCGCCTCGCTGGGTATCTACCCGGCGGTGGATCCGCTGGACTCCACCAGCCG
CCAGATGGACCCGCTGGTGATCGGCCACGAGCATTACGACACCGCCCAGCGCGTGCAGCAGACCTTGCAGAAATACAAGG
AACTGAAGGACATCATCGCCATCCTGGGCATGGACGAGCTGAGCGAAGAAGACAAGCAGTCGGTGTCGCGCGCACGCAAG
ATCGAGCGCTTCTTCAGCCAGCCCTTCCACGTGGCCGAAGTGTTCACCGGATCGCCGGGCAAGTACGTGTCGTTGAAGGA
CACCATCCGCGGCTTCAAGGCAATCTGCGACGGCGAATACGACCACCTGCCGGAGCAGGCGTTCTACATGGTCGGCAGCA
TCGAAGAAGCCGTCGAGAAGGCCAACAAGATGAGCGCCAAGGCGTAA

Upstream 100 bases:

>100_bases
ATCGCGCCCTTGCGAATCCCCAATCACGAATCCCAAATCACAAAATTCCACGAGATGGCATCGGCCACTCGGACAGAACA
AAGCTAACCGGAGCAGCAAA

Downstream 100 bases:

>100_bases
GAGCCGGGATTTGGCATTCGGGATTCGGGATTTGCTACGGCGTTGAGCGGGGTGCGGAAACGAGGTGAGTGGCCACAGTG
AAAGCTGCGGTCGCCAATCG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSQGKIVQIIGAVVDVEFPRNEVPKVYHALKVDGTEITLEVQQQLGDGVVRTIALGSTDGLKRNLVATNTERAISVPVGA
GTLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSSSTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGK
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHL
DSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYDTAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARK
IERFFSQPFHVAEVFTGSPGKYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA

Sequences:

>Translated_468_residues
MSQGKIVQIIGAVVDVEFPRNEVPKVYHALKVDGTEITLEVQQQLGDGVVRTIALGSTDGLKRNLVATNTERAISVPVGA
GTLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSSSTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMME
LINNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGK
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHL
DSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYDTAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARK
IERFFSQPFHVAEVFTGSPGKYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA
>Mature_467_residues
SQGKIVQIIGAVVDVEFPRNEVPKVYHALKVDGTEITLEVQQQLGDGVVRTIALGSTDGLKRNLVATNTERAISVPVGAG
TLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSSSTELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMEL
INNIAKAHSGLSVFAGVGERTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGKD
VLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQAVYVPADDLTDPSPATTFAHLD
STVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYDTAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARKI
ERFFSQPFHVAEVFTGSPGKYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=472, Percent_Identity=66.5254237288136, Blast_Score=633, Evalue=0.0,
Organism=Homo sapiens, GI19913428, Length=424, Percent_Identity=25, Blast_Score=113, Evalue=4e-25,
Organism=Homo sapiens, GI19913426, Length=410, Percent_Identity=24.1463414634146, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI19913424, Length=327, Percent_Identity=27.217125382263, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI50345984, Length=369, Percent_Identity=23.3062330623306, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4757810, Length=369, Percent_Identity=23.3062330623306, Blast_Score=92, Evalue=1e-18,
Organism=Escherichia coli, GI1790170, Length=466, Percent_Identity=80.6866952789699, Blast_Score=766, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=322, Percent_Identity=28.5714285714286, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1790172, Length=388, Percent_Identity=23.7113402061856, Blast_Score=106, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI25144756, Length=474, Percent_Identity=64.3459915611814, Blast_Score=614, Evalue=1e-176,
Organism=Caenorhabditis elegans, GI17565854, Length=330, Percent_Identity=27.5757575757576, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=344, Percent_Identity=26.1627906976744, Blast_Score=115, Evalue=5e-26,
Organism=Caenorhabditis elegans, GI17570191, Length=407, Percent_Identity=24.8157248157248, Blast_Score=114, Evalue=1e-25,
Organism=Caenorhabditis elegans, GI71988080, Length=309, Percent_Identity=23.9482200647249, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI71988063, Length=309, Percent_Identity=23.9482200647249, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=352, Percent_Identity=23.0113636363636, Blast_Score=77, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=462, Percent_Identity=65.1515151515152, Blast_Score=620, Evalue=1e-178,
Organism=Saccharomyces cerevisiae, GI6319603, Length=408, Percent_Identity=27.4509803921569, Blast_Score=124, Evalue=3e-29,
Organism=Saccharomyces cerevisiae, GI6319370, Length=395, Percent_Identity=24.8101265822785, Blast_Score=102, Evalue=1e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=238, Percent_Identity=25.6302521008403, Blast_Score=80, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24638766, Length=474, Percent_Identity=65.6118143459916, Blast_Score=620, Evalue=1e-178,
Organism=Drosophila melanogaster, GI28574560, Length=473, Percent_Identity=61.3107822410148, Blast_Score=578, Evalue=1e-165,
Organism=Drosophila melanogaster, GI20129479, Length=326, Percent_Identity=27.3006134969325, Blast_Score=117, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24583992, Length=329, Percent_Identity=26.7477203647416, Blast_Score=112, Evalue=6e-25,
Organism=Drosophila melanogaster, GI281361666, Length=412, Percent_Identity=24.2718446601942, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24646341, Length=412, Percent_Identity=24.2718446601942, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI17136796, Length=412, Percent_Identity=24.2718446601942, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24583988, Length=329, Percent_Identity=26.7477203647416, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583986, Length=329, Percent_Identity=26.7477203647416, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24583984, Length=329, Percent_Identity=26.7477203647416, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24658560, Length=309, Percent_Identity=24.5954692556634, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI24638768, Length=92, Percent_Identity=50, Blast_Score=80, Evalue=3e-15,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50897; Mature: 50766

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQGKIVQIIGAVVDVEFPRNEVPKVYHALKVDGTEITLEVQQQLGDGVVRTIALGSTDG
CCCCCEEHEEHHHHCCCCCCCCHHHHHHHEEECCCEEEEEEHHHHCCCCEEEEEECCCCC
LKRNLVATNTERAISVPVGAGTLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSS
CCCCCEECCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
STELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGK
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQA
EEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VYVPADDLTDPSPATTFAHLDSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYD
EEECCCCCCCCCCCCHHHHCCCEEEECCCHHHHCCCCCCCCCCCCHHCCCCEEECCCCCC
TAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARKIERFFSQPFHVAEVFTGSPG
HHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEHEEECCCC
KYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA
CEEEHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SQGKIVQIIGAVVDVEFPRNEVPKVYHALKVDGTEITLEVQQQLGDGVVRTIALGSTDG
CCCCEEHEEHHHHCCCCCCCCHHHHHHHEEECCCEEEEEEHHHHCCCCEEEEEECCCCC
LKRNLVATNTERAISVPVGAGTLGRIMDVLGRPIDEAGDVQASDHWEIHRGAPSYEDQSS
CCCCCEECCCCCEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCC
STELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNMMELINNIAKAHSGLSVFAGVGE
HHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEECCCCC
RTREGNDFYHEMKDSNVLDKVAMVYGQMNEPPGNRLRVALTGLTMAEYFRDEKDASGKGK
CCCCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEEEEHHHHHHHHCCCCCCCCCCC
DVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKSGSITSIQA
EEEEEEECCEEEEECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEE
VYVPADDLTDPSPATTFAHLDSTVTLSRNIASLGIYPAVDPLDSTSRQMDPLVIGHEHYD
EEECCCCCCCCCCCCHHHHCCCEEEECCCHHHHCCCCCCCCCCCCHHCCCCEEECCCCCC
TAQRVQQTLQKYKELKDIIAILGMDELSEEDKQSVSRARKIERFFSQPFHVAEVFTGSPG
HHHHHHHHHHHHHHHHHHHHHHCCHHHCHHHHHHHHHHHHHHHHHCCCCEEEHEEECCCC
KYVSLKDTIRGFKAICDGEYDHLPEQAFYMVGSIEEAVEKANKMSAKA
CEEEHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA