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The map label for this gene is rfbC [C]

Identifier: 21244323

GI number: 21244323

Start: 4268086

End: 4269930

Strand: Reverse

Name: rfbC [C]

Synonym: XAC3598

Alternate gene names: 21244323

Gene position: 4269930-4268086 (Counterclockwise)

Preceding gene: 21244324

Following gene: 21244322

Centisome position: 82.5

GC content: 60.16

Gene sequence:

>1845_bases
ATGGTAGTTCGGCAAATTCGCGCCCTGCTTAGCTCGTTGCTCTGGGCGTGGCGTCGTGCTCGTCTGCAAGGGAGGTCTGC
TTTTCAGCTTGTGCGCGCCTGTCTTCGTGAAGGTGCCAAGGGGCCTCGACACTTCGCGAGGCGGATGGCTGCATATGCTT
CTGGTGGATCGGCCTCTCCACCACCGGTATCTTTGGATGCCTACGAAAGCTGGCACTCCGCATTGCCGCAGCTGGAAGTT
CCCGCTGACAGTGGGATGATCAGTGTCATCATCCCGGTCTGCAATACGCCTGAGCTATTCCTCAGGGAAGCGATCGAGAG
CGTGCGCACGCAAACCTACCAGAACTGGGAAATTTGCATCCATGACGACGCGTCCAATGAGCCCCACGTGGGCCGGATAC
TGGCCGAGTTCAAGAAGCGCATTCCCAACCTGCGTGTCACTCGGTCGGAAACGCGCTCCGGCATCGCGGCCACCACCAAT
GCAGCGCTTGCGTCAGCGCGCGGACGGTGGGTGACGTTCCTCGATCACGACGACGTGCTCGACCGCAACGCGTTGGCGGC
GGTAGTGGATTGCCATATCAAGACAGGAAGCGCTGTCGTCTATACCGACCACGACATGTTGGGTGAGGATGGCCGGTTGC
GTAATCCGTACTTCAAGCCGGATTGGAACTACGACTTGTTCCTGGCGCAGATGTACCTGGGACACCTGGTCAGTTTCGAA
CACGATCTGATCAAGCGAGTGGGCTTGACGCGTAGCGAGTGCGACGGTTCGCAGGACTACGATTTGGTGCTGCGTTGCGT
GGCGGCAGGCGCCAAGGTGGGGCATGTTCCGCGCGTGCTGTATCACTGGCGCATGCACGCAGGCTCCACCGCCGCGAACG
CCGATTCAAAGCCGTATGCGCATGATTCGGGCAAGCGTGCGATCCAGTACCACGTGGATGCGGTCTATCCCGGCGCCCAG
GTGGAGGACGGTCCGCACTTGTTCTGTTATGACGTGCGCTACCCCTACGCACAGCATGCGCCAAAGGCGAGCATCATCAT
CCCGACCCGGGATGGGCTCGATCTGTTGCGGCCATGCATCGAGTCGATCCAGGGAAGGACCGATTACACGAATTTCGAAA
TCATCGTTGTCGATAACGGGTCCAAGGATCCTGCCACGCTCGAATGGCTTGATGCGATGTCCAACGAACCGTGGTTTCGC
GTGCTGCAGGCGGATGTGCCGTTCAACTGGTCTGCGCTCAATAACCTTGCCGCGGCGAGCGCCGAGGGCGAAGTACTCGT
ATTCCTGAACAATGACACCGAAGTCGCTTCAGCGGACTGGCTGCAACGATTGGTGGAAAACGCGCTCAGGCCGGATGTCG
GCGCATGTGGCGCATTGCTCCTGTATGCAGATGGCAGCATCCAGCATGCGGGCGTGGTTGTCGGCATGGGGGGCTGGGCC
GATCACGTGTTCAAGGGGCAGCAGCCGATCCATCACCAGCACCTGTTCGTATCGCCGATTCTGCGCCGCGAAGTGCTGGC
GGTGACAGGGGCGTGTGTCGCCATCTCGCGCGCCAACTTCGATGCCATTGGCGGATTCGACGAGTCCTTCGTCGTCTGCG
GCAGCGACGTGGAACTGTGCCTGCGTGCCATGGCGAATGGCAAGCGCACCGTGTATGTGCCGGAGGCGATCCTTATCCAC
CACGAATCCAAGACGCGAGATCCGCGCGTAATTCCAGAGAGTGATTTCGTGCGATCGGCGCAGGCCTATTCGCCATATCG
TGAATCCGGAGATCCGTTCTACAGCCCGAACCTGGATTACATGTCGCCGTCGCCGGCCTTGCGAGGAGCGCAGGCAGATG
CTTGA

Upstream 100 bases:

>100_bases
ACCTGGTGGTGTGTGTGGCAACGACCGTGGTGCTCAGACCTGGCCGTTCATTGGCTGAGGGAAGCATCAAACTGATTTGA
GGTGTTGAAATGGGGGTTTC

Downstream 100 bases:

>100_bases
TCGTTTGCTAAGGCGCGCCGCACGTGGGTTGAGGACAGCAGTCGTCGCATCCGACCCAGTGCGCACGAGCGTCGGGGAGA
TCACGCCCTGTGAACCCAGG

Product: truncated O-antigen biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MVVRQIRALLSSLLWAWRRARLQGRSAFQLVRACLREGAKGPRHFARRMAAYASGGSASPPPVSLDAYESWHSALPQLEV
PADSGMISVIIPVCNTPELFLREAIESVRTQTYQNWEICIHDDASNEPHVGRILAEFKKRIPNLRVTRSETRSGIAATTN
AALASARGRWVTFLDHDDVLDRNALAAVVDCHIKTGSAVVYTDHDMLGEDGRLRNPYFKPDWNYDLFLAQMYLGHLVSFE
HDLIKRVGLTRSECDGSQDYDLVLRCVAAGAKVGHVPRVLYHWRMHAGSTAANADSKPYAHDSGKRAIQYHVDAVYPGAQ
VEDGPHLFCYDVRYPYAQHAPKASIIIPTRDGLDLLRPCIESIQGRTDYTNFEIIVVDNGSKDPATLEWLDAMSNEPWFR
VLQADVPFNWSALNNLAAASAEGEVLVFLNNDTEVASADWLQRLVENALRPDVGACGALLLYADGSIQHAGVVVGMGGWA
DHVFKGQQPIHHQHLFVSPILRREVLAVTGACVAISRANFDAIGGFDESFVVCGSDVELCLRAMANGKRTVYVPEAILIH
HESKTRDPRVIPESDFVRSAQAYSPYRESGDPFYSPNLDYMSPSPALRGAQADA

Sequences:

>Translated_614_residues
MVVRQIRALLSSLLWAWRRARLQGRSAFQLVRACLREGAKGPRHFARRMAAYASGGSASPPPVSLDAYESWHSALPQLEV
PADSGMISVIIPVCNTPELFLREAIESVRTQTYQNWEICIHDDASNEPHVGRILAEFKKRIPNLRVTRSETRSGIAATTN
AALASARGRWVTFLDHDDVLDRNALAAVVDCHIKTGSAVVYTDHDMLGEDGRLRNPYFKPDWNYDLFLAQMYLGHLVSFE
HDLIKRVGLTRSECDGSQDYDLVLRCVAAGAKVGHVPRVLYHWRMHAGSTAANADSKPYAHDSGKRAIQYHVDAVYPGAQ
VEDGPHLFCYDVRYPYAQHAPKASIIIPTRDGLDLLRPCIESIQGRTDYTNFEIIVVDNGSKDPATLEWLDAMSNEPWFR
VLQADVPFNWSALNNLAAASAEGEVLVFLNNDTEVASADWLQRLVENALRPDVGACGALLLYADGSIQHAGVVVGMGGWA
DHVFKGQQPIHHQHLFVSPILRREVLAVTGACVAISRANFDAIGGFDESFVVCGSDVELCLRAMANGKRTVYVPEAILIH
HESKTRDPRVIPESDFVRSAQAYSPYRESGDPFYSPNLDYMSPSPALRGAQADA
>Mature_614_residues
MVVRQIRALLSSLLWAWRRARLQGRSAFQLVRACLREGAKGPRHFARRMAAYASGGSASPPPVSLDAYESWHSALPQLEV
PADSGMISVIIPVCNTPELFLREAIESVRTQTYQNWEICIHDDASNEPHVGRILAEFKKRIPNLRVTRSETRSGIAATTN
AALASARGRWVTFLDHDDVLDRNALAAVVDCHIKTGSAVVYTDHDMLGEDGRLRNPYFKPDWNYDLFLAQMYLGHLVSFE
HDLIKRVGLTRSECDGSQDYDLVLRCVAAGAKVGHVPRVLYHWRMHAGSTAANADSKPYAHDSGKRAIQYHVDAVYPGAQ
VEDGPHLFCYDVRYPYAQHAPKASIIIPTRDGLDLLRPCIESIQGRTDYTNFEIIVVDNGSKDPATLEWLDAMSNEPWFR
VLQADVPFNWSALNNLAAASAEGEVLVFLNNDTEVASADWLQRLVENALRPDVGACGALLLYADGSIQHAGVVVGMGGWA
DHVFKGQQPIHHQHLFVSPILRREVLAVTGACVAISRANFDAIGGFDESFVVCGSDVELCLRAMANGKRTVYVPEAILIH
HESKTRDPRVIPESDFVRSAQAYSPYRESGDPFYSPNLDYMSPSPALRGAQADA

Specific function: Slime polysaccharide colanic acid biosynthesis. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 67924; Mature: 67924

Theoretical pI: Translated: 6.47; Mature: 6.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVRQIRALLSSLLWAWRRARLQGRSAFQLVRACLREGAKGPRHFARRMAAYASGGSASP
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
PPVSLDAYESWHSALPQLEVPADSGMISVIIPVCNTPELFLREAIESVRTQTYQNWEICI
CCCCCHHHHHHHHCCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEE
HDDASNEPHVGRILAEFKKRIPNLRVTRSETRSGIAATTNAALASARGRWVTFLDHDDVL
ECCCCCCCHHHHHHHHHHHHCCCCEEEHHHHCCCCEEECHHHHHHCCCCEEEEECCCCCC
DRNALAAVVDCHIKTGSAVVYTDHDMLGEDGRLRNPYFKPDWNYDLFLAQMYLGHLVSFE
CCHHHEEEEEEEEECCCEEEEECHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HDLIKRVGLTRSECDGSQDYDLVLRCVAAGAKVGHVPRVLYHWRMHAGSTAANADSKPYA
HHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
HDSGKRAIQYHVDAVYPGAQVEDGPHLFCYDVRYPYAQHAPKASIIIPTRDGLDLLRPCI
CCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHCCCCCEEEEECCCCHHHHHHHH
ESIQGRTDYTNFEIIVVDNGSKDPATLEWLDAMSNEPWFRVLQADVPFNWSALNNLAAAS
HHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCC
AEGEVLVFLNNDTEVASADWLQRLVENALRPDVGACGALLLYADGSIQHAGVVVGMGGWA
CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECCCCH
DHVFKGQQPIHHQHLFVSPILRREVLAVTGACVAISRANFDAIGGFDESFVVCGSDVELC
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHCCCCCCCEEEECCCHHHH
LRAMANGKRTVYVPEAILIHHESKTRDPRVIPESDFVRSAQAYSPYRESGDPFYSPNLDY
HHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCC
MSPSPALRGAQADA
CCCCCCCCCCCCCC
>Mature Secondary Structure
MVVRQIRALLSSLLWAWRRARLQGRSAFQLVRACLREGAKGPRHFARRMAAYASGGSASP
CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCC
PPVSLDAYESWHSALPQLEVPADSGMISVIIPVCNTPELFLREAIESVRTQTYQNWEICI
CCCCCHHHHHHHHCCCCEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEE
HDDASNEPHVGRILAEFKKRIPNLRVTRSETRSGIAATTNAALASARGRWVTFLDHDDVL
ECCCCCCCHHHHHHHHHHHHCCCCEEEHHHHCCCCEEECHHHHHHCCCCEEEEECCCCCC
DRNALAAVVDCHIKTGSAVVYTDHDMLGEDGRLRNPYFKPDWNYDLFLAQMYLGHLVSFE
CCHHHEEEEEEEEECCCEEEEECHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HDLIKRVGLTRSECDGSQDYDLVLRCVAAGAKVGHVPRVLYHWRMHAGSTAANADSKPYA
HHHHHHHCCCHHHCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
HDSGKRAIQYHVDAVYPGAQVEDGPHLFCYDVRYPYAQHAPKASIIIPTRDGLDLLRPCI
CCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCHHHCCCCCEEEEECCCCHHHHHHHH
ESIQGRTDYTNFEIIVVDNGSKDPATLEWLDAMSNEPWFRVLQADVPFNWSALNNLAAAS
HHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCC
AEGEVLVFLNNDTEVASADWLQRLVENALRPDVGACGALLLYADGSIQHAGVVVGMGGWA
CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECCCCH
DHVFKGQQPIHHQHLFVSPILRREVLAVTGACVAISRANFDAIGGFDESFVVCGSDVELC
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHCCCCCCCEEEECCCHHHH
LRAMANGKRTVYVPEAILIHHESKTRDPRVIPESDFVRSAQAYSPYRESGDPFYSPNLDY
HHHHCCCCEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHCCCHHHCCCCCCCCCCCC
MSPSPALRGAQADA
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]