| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is mrcA [H]
Identifier: 21244111
GI number: 21244111
Start: 3990480
End: 3993002
Strand: Direct
Name: mrcA [H]
Synonym: XAC3386
Alternate gene names: 21244111
Gene position: 3990480-3993002 (Clockwise)
Preceding gene: 21244096
Following gene: 21244112
Centisome position: 77.1
GC content: 65.56
Gene sequence:
>2523_bases GTGCCGTCTTCTGCGATCCCCAGAGTTCGGCCCCAGCCAAACTCGGCGTCATCTATACTCTGTGACCAAGAAATCTGCAA TCGGAATCTCTCTTACATGCCCCGTATTCGCCGTTGGCTGGGCTGGATCCTGGCCACGACCGTCGTGCTCGCACTGCTTG GCGCTATTGCTGCCGGCGGCCTGTATTACGCCATTTCCTCGAAGTTGCCAGACGTTCAATCGCTCAAGCAGGTAGAGCTG CAGGAGCCGATGTACGTCTATTCCAGCGATGGCCGGCTCATGGCCGTCTATGGCGAGACGCGGCGCTATCCCATCCAGAT GAAGGACGTGCCGCTGCGCCTGAAGCAGGCCTTCCTGGCCACCGAGGACGCGCGCTTCTACGAGCACGGCGGCGTGGACT ACAAGGGCATTGCCCGCGCGGTATGGTTGCTCACAACCACCGATGCCAAGCGCGTGCCGGGTGGTTCGACCATCACCCAG CAGGTGGCGCGGCAGTTCTTCCTGAGTTCGGAATACAGCTACACCCGCAAGCTGGCGGAGATCCTGCTGGCGCGCAAGAT TGAAAGTGAGCTGAGCAAGGACGAGATCTTCGAGCTGTATCTCAACAAGAGTTTCTTCGGCAACCGCGCCTACGGCGTCG GGGCCGCTGCCGAGTACTACTACGGCAAGAAGATGAGCGAATTGAGCCTGGACGAGATGGCCTCGCTGGCCGGCATCCCC AAGTTCCCATCCAGCGGCAACCCGATCAGCAACCCTGAGCGTGCGCAGGAGCGTCGCGACTATTACGTCCTGCAGCGCAT GGCCGACCTGGGCTTTGTCAGCCAGGCCGAAGCCGACGCCGCCAAGGCCGTGCCGATGCACGCCAAGCCGCATGAGCCGC CGGTGGAGGTGTACGCCCCTTACGTGGCCGAGCTGGTGCGTCAGGAAATGATCGCCAAGTACGGCGGCGATGTGCTCAAC AAGGGCTACCACGTCACCACGACCATCGATGCGACCCTGCAGACCGGTGCGGATGTGGCGGTCGCCGACGGCTTGCGGGT CTACGATCATCGCCATGGCTGGCACGGCGTAGAGCAGCACTTCGACGTGGCCGCCGATGCGGACGCGCCCGCACTGGCCA AGCACCTGGCAGGCGCATTCACCCAGGGCGGACTGCGTGCGGTGATCGTGGCGCGCACCAATCCCGATGGCGGGGTCACG GTCGTGCAGAGCGACAAGACCGAACTGACCCTGCCCGCCACTGCCAGCCGCTGGACCGGCAAGACCCCGGCCAAGCTGCT GACCCGCGGCGACCTGACCCGCATCCGCACCGGCGAGAAGGACGGCGAGTGGCTCATCGACCAGTTGCCGCGTGGCCAGG CGGCGTTGGTCTCGCTGGACGCCAATAGCGGCGCGCTGCGTGCGCTGGTCGGCGGCTTCAGCTTTGCGGGGAACAAGTTC AACCGCGCCACCCAGGCACGGCGCCAGCCAGGATCGAGCTTCAAGCCGTTCGTCTACGCGGCCGCGTTCGAAAAGGGCTT CAACCCGGCCTCGATCGTGCTGGACGCGCCGGTGGTGTTCCGCGACCGGCGCGGCAAGACCTGGTCGCCGCAGAACGACG GCGGCGGCTTCCGCGGGCCGATGCGCCTGCGCGAAGCGCTGGTGCAGTCGCGCAACCTGGTGTCGGTGCGCCTGCTGGAC GCGATCAGCGTCGATTTCGCACGCAAATACATCAGCCAGTTCGGTTTCCAGGAGGCCGAGTTGCCGCCTAACCTGTCGAT GTCGCTGGGCACCGCTTCGCTGACGCCGCTGTCTGTGGCACGCGGTTATGCGGTGTTCGCCAATGGCGGCTCACGGGTGG ACACCTGGATCGTGGACGAGGTCAAAGACCGCGAGGGCAATGTCATCTTCAAAGAAGTGCCGGCCGTGGCCTGCCGCACC TGCGCCCTGCAGGGCGGCACCGCCGCGCCCGTGAGCCAGGTCGTGGATGGCTTCAACTTCGGCGCCCAGGCACCTGAAAC CCCGCCCGCTGCGCCTGCCACGGCCACGCCGGTGCCGGCACAGACCGCCCCTGCGGCAACCGCAGAGACCAAAATCGCGC CACGCGCGATCGACGAGCGCACCGCCTACCAGCTGGTGTCGATGATGCGCGACGTGGTCCAGCGCGGCACCGGCACCGCG GCCAAGGTACTCGGCCGCGAGGACGTGGGCGGCAAGACCGGCTCCACCAACGAGCACCGCGACGCCTGGTTCTCCGGCTT TGGCGGCCCCTACGTCACCACCGTATGGGTGGGCCGCGACGACTTCCGCTCGCTCGGCTATCGCGAATACGGCGGCAAGG CGGCGCTGCCGATCTGGATCGACTACATGCGCGTAGCGCTCAAGGACAAGCCGATCGCCGCCAACGACCCGCCCGATGGC ATGACCCAGGCCACCATCAATGGCGCCGTCGAATGGGTAAAGAACGAAGATCTGGACCGCCTGCAGGATTACGACTACGG CCTGCAGGAACAGCAGGACGAGAAGGCGTTCGATATTTTCTGA
Upstream 100 bases:
>100_bases ACGGGCACTTGGACGCATGTGCGCCCTCGTATTAATAATCAAATTTTAACAGTTGACAAGCCCTTCACGCGCCAGGCAAT GACCCGGCGACGCTACCCCA
Downstream 100 bases:
>100_bases GGAGCTGGGATTCGGGAATCGGGATTGGGGAATCGAACGCGGCGTGGCTGTTCGGTTCCCCAATTTCTTGGCCCCCGATT GGATAAGCGCAGGCCGTTGC
Product: penicillin-binding protein 1A
Products: NA
Alternate protein names: PBP-1a; PBP1a; Penicillin-insensitive transglycosylase; Peptidoglycan TGase; Penicillin-sensitive transpeptidase; DD-transpeptidase [H]
Number of amino acids: Translated: 840; Mature: 839
Protein sequence:
>840_residues MPSSAIPRVRPQPNSASSILCDQEICNRNLSYMPRIRRWLGWILATTVVLALLGAIAAGGLYYAISSKLPDVQSLKQVEL QEPMYVYSSDGRLMAVYGETRRYPIQMKDVPLRLKQAFLATEDARFYEHGGVDYKGIARAVWLLTTTDAKRVPGGSTITQ QVARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVGAAAEYYYGKKMSELSLDEMASLAGIP KFPSSGNPISNPERAQERRDYYVLQRMADLGFVSQAEADAAKAVPMHAKPHEPPVEVYAPYVAELVRQEMIAKYGGDVLN KGYHVTTTIDATLQTGADVAVADGLRVYDHRHGWHGVEQHFDVAADADAPALAKHLAGAFTQGGLRAVIVARTNPDGGVT VVQSDKTELTLPATASRWTGKTPAKLLTRGDLTRIRTGEKDGEWLIDQLPRGQAALVSLDANSGALRALVGGFSFAGNKF NRATQARRQPGSSFKPFVYAAAFEKGFNPASIVLDAPVVFRDRRGKTWSPQNDGGGFRGPMRLREALVQSRNLVSVRLLD AISVDFARKYISQFGFQEAELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWIVDEVKDREGNVIFKEVPAVACRT CALQGGTAAPVSQVVDGFNFGAQAPETPPAAPATATPVPAQTAPAATAETKIAPRAIDERTAYQLVSMMRDVVQRGTGTA AKVLGREDVGGKTGSTNEHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRVALKDKPIAANDPPDG MTQATINGAVEWVKNEDLDRLQDYDYGLQEQQDEKAFDIF
Sequences:
>Translated_840_residues MPSSAIPRVRPQPNSASSILCDQEICNRNLSYMPRIRRWLGWILATTVVLALLGAIAAGGLYYAISSKLPDVQSLKQVEL QEPMYVYSSDGRLMAVYGETRRYPIQMKDVPLRLKQAFLATEDARFYEHGGVDYKGIARAVWLLTTTDAKRVPGGSTITQ QVARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVGAAAEYYYGKKMSELSLDEMASLAGIP KFPSSGNPISNPERAQERRDYYVLQRMADLGFVSQAEADAAKAVPMHAKPHEPPVEVYAPYVAELVRQEMIAKYGGDVLN KGYHVTTTIDATLQTGADVAVADGLRVYDHRHGWHGVEQHFDVAADADAPALAKHLAGAFTQGGLRAVIVARTNPDGGVT VVQSDKTELTLPATASRWTGKTPAKLLTRGDLTRIRTGEKDGEWLIDQLPRGQAALVSLDANSGALRALVGGFSFAGNKF NRATQARRQPGSSFKPFVYAAAFEKGFNPASIVLDAPVVFRDRRGKTWSPQNDGGGFRGPMRLREALVQSRNLVSVRLLD AISVDFARKYISQFGFQEAELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWIVDEVKDREGNVIFKEVPAVACRT CALQGGTAAPVSQVVDGFNFGAQAPETPPAAPATATPVPAQTAPAATAETKIAPRAIDERTAYQLVSMMRDVVQRGTGTA AKVLGREDVGGKTGSTNEHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRVALKDKPIAANDPPDG MTQATINGAVEWVKNEDLDRLQDYDYGLQEQQDEKAFDIF >Mature_839_residues PSSAIPRVRPQPNSASSILCDQEICNRNLSYMPRIRRWLGWILATTVVLALLGAIAAGGLYYAISSKLPDVQSLKQVELQ EPMYVYSSDGRLMAVYGETRRYPIQMKDVPLRLKQAFLATEDARFYEHGGVDYKGIARAVWLLTTTDAKRVPGGSTITQQ VARQFFLSSEYSYTRKLAEILLARKIESELSKDEIFELYLNKSFFGNRAYGVGAAAEYYYGKKMSELSLDEMASLAGIPK FPSSGNPISNPERAQERRDYYVLQRMADLGFVSQAEADAAKAVPMHAKPHEPPVEVYAPYVAELVRQEMIAKYGGDVLNK GYHVTTTIDATLQTGADVAVADGLRVYDHRHGWHGVEQHFDVAADADAPALAKHLAGAFTQGGLRAVIVARTNPDGGVTV VQSDKTELTLPATASRWTGKTPAKLLTRGDLTRIRTGEKDGEWLIDQLPRGQAALVSLDANSGALRALVGGFSFAGNKFN RATQARRQPGSSFKPFVYAAAFEKGFNPASIVLDAPVVFRDRRGKTWSPQNDGGGFRGPMRLREALVQSRNLVSVRLLDA ISVDFARKYISQFGFQEAELPPNLSMSLGTASLTPLSVARGYAVFANGGSRVDTWIVDEVKDREGNVIFKEVPAVACRTC ALQGGTAAPVSQVVDGFNFGAQAPETPPAAPATATPVPAQTAPAATAETKIAPRAIDERTAYQLVSMMRDVVQRGTGTAA KVLGREDVGGKTGSTNEHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWIDYMRVALKDKPIAANDPPDGM TQATINGAVEWVKNEDLDRLQDYDYGLQEQQDEKAFDIF
Specific function: Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal
COG id: COG5009
COG function: function code M; Membrane carboxypeptidase/penicillin-binding protein
Gene ontology:
Cell location: Cell inner membrane; Single-pass type II membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=835, Percent_Identity=39.8802395209581, Blast_Score=543, Evalue=1e-155, Organism=Escherichia coli, GI1786343, Length=268, Percent_Identity=36.1940298507463, Blast_Score=137, Evalue=3e-33, Organism=Escherichia coli, GI1788867, Length=307, Percent_Identity=33.5504885993485, Blast_Score=129, Evalue=5e-31, Organism=Escherichia coli, GI1789601, Length=178, Percent_Identity=34.2696629213483, Blast_Score=90, Evalue=7e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.-
Molecular weight: Translated: 91745; Mature: 91614
Theoretical pI: Translated: 8.22; Mature: 8.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSSAIPRVRPQPNSASSILCDQEICNRNLSYMPRIRRWLGWILATTVVLALLGAIAAGG CCCCCCCCCCCCCCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LYYAISSKLPDVQSLKQVELQEPMYVYSSDGRLMAVYGETRRYPIQMKDVPLRLKQAFLA EEEEECCCCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCEEECCCCHHHHHHHHH TEDARFYEHGGVDYKGIARAVWLLTTTDAKRVPGGSTITQQVARQFFLSSEYSYTRKLAE CCCCHHHHCCCCCHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH ILLARKIESELSKDEIFELYLNKSFFGNRAYGVGAAAEYYYGKKMSELSLDEMASLAGIP HHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCCCCCHHHHHHCCCHHHCCHHHHHHHCCCC KFPSSGNPISNPERAQERRDYYVLQRMADLGFVSQAEADAAKAVPMHAKPHEPPVEVYAP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCCCCCCCCHHHHHH YVAELVRQEMIAKYGGDVLNKGYHVTTTIDATLQTGADVAVADGLRVYDHRHGWHGVEQH HHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEHHHCCCCEEECCCEEEECCCCCCCCHHHH FDVAADADAPALAKHLAGAFTQGGLRAVIVARTNPDGGVTVVQSDKTELTLPATASRWTG CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEECCCCEEEECCCCCCCCC KTPAKLLTRGDLTRIRTGEKDGEWLIDQLPRGQAALVSLDANSGALRALVGGFSFAGNKF CCHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCH NRATQARRQPGSSFKPFVYAAAFEKGFNPASIVLDAPVVFRDRRGKTWSPQNDGGGFRGP HHHHHHHHCCCCCCCCCEEEEHHHCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCH MRLREALVQSRNLVSVRLLDAISVDFARKYISQFGFQEAELPPNLSMSLGTASLTPLSVA HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHH RGYAVFANGGSRVDTWIVDEVKDREGNVIFKEVPAVACRTCALQGGTAAPVSQVVDGFNF CCEEEEECCCCEEEHEEHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCHHHHHHCCCC GAQAPETPPAAPATATPVPAQTAPAATAETKIAPRAIDERTAYQLVSMMRDVVQRGTGTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH AKVLGREDVGGKTGSTNEHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWI HHHHCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCHHHHHCCCHHCCCCCCHHHHH DYMRVALKDKPIAANDPPDGMTQATINGAVEWVKNEDLDRLQDYDYGLQEQQDEKAFDIF HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHCCCC >Mature Secondary Structure PSSAIPRVRPQPNSASSILCDQEICNRNLSYMPRIRRWLGWILATTVVLALLGAIAAGG CCCCCCCCCCCCCCCCCEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LYYAISSKLPDVQSLKQVELQEPMYVYSSDGRLMAVYGETRRYPIQMKDVPLRLKQAFLA EEEEECCCCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCEEECCCCHHHHHHHHH TEDARFYEHGGVDYKGIARAVWLLTTTDAKRVPGGSTITQQVARQFFLSSEYSYTRKLAE CCCCHHHHCCCCCHHHHHHEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH ILLARKIESELSKDEIFELYLNKSFFGNRAYGVGAAAEYYYGKKMSELSLDEMASLAGIP HHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCCCCCHHHHHHCCCHHHCCHHHHHHHCCCC KFPSSGNPISNPERAQERRDYYVLQRMADLGFVSQAEADAAKAVPMHAKPHEPPVEVYAP CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHCCCCCCCCCCCCHHHHHH YVAELVRQEMIAKYGGDVLNKGYHVTTTIDATLQTGADVAVADGLRVYDHRHGWHGVEQH HHHHHHHHHHHHHHCCHHHCCCEEEEEEEEEHHHCCCCEEECCCEEEECCCCCCCCHHHH FDVAADADAPALAKHLAGAFTQGGLRAVIVARTNPDGGVTVVQSDKTELTLPATASRWTG CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEECCCCEEEECCCCCCCCC KTPAKLLTRGDLTRIRTGEKDGEWLIDQLPRGQAALVSLDANSGALRALVGGFSFAGNKF CCHHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCH NRATQARRQPGSSFKPFVYAAAFEKGFNPASIVLDAPVVFRDRRGKTWSPQNDGGGFRGP HHHHHHHHCCCCCCCCCEEEEHHHCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCH MRLREALVQSRNLVSVRLLDAISVDFARKYISQFGFQEAELPPNLSMSLGTASLTPLSVA HHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCHHHHH RGYAVFANGGSRVDTWIVDEVKDREGNVIFKEVPAVACRTCALQGGTAAPVSQVVDGFNF CCEEEEECCCCEEEHEEHHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCHHHHHHCCCC GAQAPETPPAAPATATPVPAQTAPAATAETKIAPRAIDERTAYQLVSMMRDVVQRGTGTA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHH AKVLGREDVGGKTGSTNEHRDAWFSGFGGPYVTTVWVGRDDFRSLGYREYGGKAALPIWI HHHHCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEECCHHHHHCCCHHCCCCCCHHHHH DYMRVALKDKPIAANDPPDGMTQATINGAVEWVKNEDLDRLQDYDYGLQEQQDEKAFDIF HHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]