| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is plcN [H]
Identifier: 21243886
GI number: 21243886
Start: 3712171
End: 3713949
Strand: Direct
Name: plcN [H]
Synonym: XAC3160
Alternate gene names: 21243886
Gene position: 3712171-3713949 (Clockwise)
Preceding gene: 21243885
Following gene: 21243887
Centisome position: 71.73
GC content: 68.18
Gene sequence:
>1779_bases GTGGATGCGCAACGCGCCTGGGATCACGGCCGGCTCGGCCACTGGGCCGCCGCCAAGCACAACCATGCGCTGGGCTATTA CCGGCGCGCGGATATCCCGTTCCAGTACGCGCTCGCCGACGCCTTCACCATCTGCGATGCGTACCACGCCGCGATCCAGA CCGGCACCAATTCCAATCGCGTGTTCCTGTGGACCGGCGGCAACGATCCGCAGGCGCGCGCAGGCGGCCCGGTGATCGGC AATTCGCACGACAACTTTGCGGAACTGGGCGGTTTTGCCGAGCCGTATCACTGGGGCACCTACGTCCAAGCGCTGCAGCA CGCCGGTGTGTCCTGGCAGATCTATCAGGACATGGCAGACAACTTCACCGACAACCCATTGGCCGGCTTTGCGGCATTTC GACAGGCGTACAGCGCCGCGCCCGGACATGATCCGCAACTTCGCGCGCGTGGCGTGAGCACGCGCGGTCTTGCGCTGCTG CGCGAGGACGTGCTGGGCGGGCGCCTGCCTGCGGTGAGCTACATCATTGCCGATGCGGCCGGCAGCGAGCATCCGGATCC GTCCAGCCCCGCCCAGGGCGCGGCCTACACCGCACGCGTGCTGGATGCGCTCACAGCCGATCCGGCGGTGTGGAGTCGCA CCGCCTTGCTGGTGATGTTCGACGAGAACGACGGCTTCTTCGACCATATGCCCCCGCCCGCACCGCCGTCGCCGGATGCA CGCGCAACTGGCGGATTTGCCGGCGCATCGACGGTTGCCACCGACGACGACTATCACCGCCACCCGGCCCCGGGCGAACA GAAAGTGGATCTTCCCGAACTGCGCGGGCGGCCCTATGGGCTTGGCCCGCGCGTGCCGATGTATGTGGTCTCGCCATGGA GCCGCGGCGGCTGGGTGGATTCGCAGGTGTACGACCACACCTCGGTACTGCGTCTGCTCGAACGCCGCTTCGGCGTGCCT GCGCCGGAGATCACGCCCTGGCGGCGTGCAGTGTGCGGCGACTTGACCAACGCCTTCGATTTCCGCCAGACCGATGCGCG CCCCTTCGCCGCGGCGCTGCCCGATGTCGGCGCAACCGCAGCGCGCGCAGCAGCCTTGCGCGAGCATGCACTGCCGCCGT TGCCGGCCACGTTGCAGCCGCCCGAGCAACCGTTCGGCGTGCGCCGCTCGCGCGGGCTGCCGTATCGTCCCAGCGTGGAG CTGACCTACCTGCCCGAGCGCGGCGAAGTGAACCTCCGCATGGCCAACGCGGGCGCAGCGGCGGTGCTGCATGTCTACGA CCGCTTCGATCTGGCCGCAATTCCGCGCCGCTATACGGTGGGAAATGACGCCACCGTGGACGGCACGTGGACCACCTACG ACGGCCGCTACGATCTGTGGCTGCCCGGTCCCAACGGCTTCCATCGTCACTATCGGGGCGATGTGGGTGCACCGCTGCTG GTGGCCGAGATCGCGCGGGATCCGAACGATTGCACCTGCATGCTGCTATCGCTACGTCACGGCGGCAGCACTGCCGTGCA GCTTGAGCTGCAGCCAGGTGCATATGCAGCCGCACAGCCGCGCGAGCGCCTGCGCCTTGCACCCGGCATCACCGAGCAGC GGCGCTGGAAGGCGGCAGCAACCGGCGGCTGGTACGACCTATGGGTGCACCACGACGGCGCGGCCCAGCGTCTGGCCGGG CGCATCGAAACCGGCGCAGACAGCGTCAGCGACCCGGCCATGGGTGGGCCGGCGCGATTGCAGCAAGAGTTGCCTATCTT GATAGGCGCACTCGATTAA
Upstream 100 bases:
>100_bases TGCAACCCAGCGAGGACGGCCGCCAGTGGCTGACGCCGTTTGCGCTGGATACGGCAGCGCAATTCGGCTTCATGCGCGTG CAAGGCCGCCGCATAGTTGG
Downstream 100 bases:
>100_bases GAGCGGCTTACACAACGACTGCGCTCTCCGCCACGCGTGCGCGGTCGACGCCAGGTGCCGCATGTCCCACGCGTACACGG CGGTTCCGAGCGCAACGTTC
Product: phospholipase C
Products: NA
Alternate protein names: PLC-N; Phosphatidylcholine cholinephosphohydrolase; Phosphatidylcholine-hydrolyzing phospholipase C; PC-PLC [H]
Number of amino acids: Translated: 592; Mature: 592
Protein sequence:
>592_residues MDAQRAWDHGRLGHWAAAKHNHALGYYRRADIPFQYALADAFTICDAYHAAIQTGTNSNRVFLWTGGNDPQARAGGPVIG NSHDNFAELGGFAEPYHWGTYVQALQHAGVSWQIYQDMADNFTDNPLAGFAAFRQAYSAAPGHDPQLRARGVSTRGLALL REDVLGGRLPAVSYIIADAAGSEHPDPSSPAQGAAYTARVLDALTADPAVWSRTALLVMFDENDGFFDHMPPPAPPSPDA RATGGFAGASTVATDDDYHRHPAPGEQKVDLPELRGRPYGLGPRVPMYVVSPWSRGGWVDSQVYDHTSVLRLLERRFGVP APEITPWRRAVCGDLTNAFDFRQTDARPFAAALPDVGATAARAAALREHALPPLPATLQPPEQPFGVRRSRGLPYRPSVE LTYLPERGEVNLRMANAGAAAVLHVYDRFDLAAIPRRYTVGNDATVDGTWTTYDGRYDLWLPGPNGFHRHYRGDVGAPLL VAEIARDPNDCTCMLLSLRHGGSTAVQLELQPGAYAAAQPRERLRLAPGITEQRRWKAAATGGWYDLWVHHDGAAQRLAG RIETGADSVSDPAMGGPARLQQELPILIGALD
Sequences:
>Translated_592_residues MDAQRAWDHGRLGHWAAAKHNHALGYYRRADIPFQYALADAFTICDAYHAAIQTGTNSNRVFLWTGGNDPQARAGGPVIG NSHDNFAELGGFAEPYHWGTYVQALQHAGVSWQIYQDMADNFTDNPLAGFAAFRQAYSAAPGHDPQLRARGVSTRGLALL REDVLGGRLPAVSYIIADAAGSEHPDPSSPAQGAAYTARVLDALTADPAVWSRTALLVMFDENDGFFDHMPPPAPPSPDA RATGGFAGASTVATDDDYHRHPAPGEQKVDLPELRGRPYGLGPRVPMYVVSPWSRGGWVDSQVYDHTSVLRLLERRFGVP APEITPWRRAVCGDLTNAFDFRQTDARPFAAALPDVGATAARAAALREHALPPLPATLQPPEQPFGVRRSRGLPYRPSVE LTYLPERGEVNLRMANAGAAAVLHVYDRFDLAAIPRRYTVGNDATVDGTWTTYDGRYDLWLPGPNGFHRHYRGDVGAPLL VAEIARDPNDCTCMLLSLRHGGSTAVQLELQPGAYAAAQPRERLRLAPGITEQRRWKAAATGGWYDLWVHHDGAAQRLAG RIETGADSVSDPAMGGPARLQQELPILIGALD >Mature_592_residues MDAQRAWDHGRLGHWAAAKHNHALGYYRRADIPFQYALADAFTICDAYHAAIQTGTNSNRVFLWTGGNDPQARAGGPVIG NSHDNFAELGGFAEPYHWGTYVQALQHAGVSWQIYQDMADNFTDNPLAGFAAFRQAYSAAPGHDPQLRARGVSTRGLALL REDVLGGRLPAVSYIIADAAGSEHPDPSSPAQGAAYTARVLDALTADPAVWSRTALLVMFDENDGFFDHMPPPAPPSPDA RATGGFAGASTVATDDDYHRHPAPGEQKVDLPELRGRPYGLGPRVPMYVVSPWSRGGWVDSQVYDHTSVLRLLERRFGVP APEITPWRRAVCGDLTNAFDFRQTDARPFAAALPDVGATAARAAALREHALPPLPATLQPPEQPFGVRRSRGLPYRPSVE LTYLPERGEVNLRMANAGAAAVLHVYDRFDLAAIPRRYTVGNDATVDGTWTTYDGRYDLWLPGPNGFHRHYRGDVGAPLL VAEIARDPNDCTCMLLSLRHGGSTAVQLELQPGAYAAAQPRERLRLAPGITEQRRWKAAATGGWYDLWVHHDGAAQRLAG RIETGADSVSDPAMGGPARLQQELPILIGALD
Specific function: Hydrolyzes phosphatidylserine as well as phosphatidylcholine [H]
COG id: COG3511
COG function: function code M; Phospholipase C
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial phospholipase C family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007312 - InterPro: IPR008475 - InterPro: IPR017767 - InterPro: IPR006311 [H]
Pfam domain/function: PF05506 DUF756; PF04185 Phosphoesterase [H]
EC number: =3.1.4.3 [H]
Molecular weight: Translated: 64294; Mature: 64294
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDAQRAWDHGRLGHWAAAKHNHALGYYRRADIPFQYALADAFTICDAYHAAIQTGTNSNR CCCCCCCCCCCCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE VFLWTGGNDPQARAGGPVIGNSHDNFAELGGFAEPYHWGTYVQALQHAGVSWQIYQDMAD EEEEECCCCCCCCCCCCEECCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHC NFTDNPLAGFAAFRQAYSAAPGHDPQLRARGVSTRGLALLREDVLGGRLPAVSYIIADAA CCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCHHHEEEECCC GSEHPDPSSPAQGAAYTARVLDALTADPAVWSRTALLVMFDENDGFFDHMPPPAPPSPDA CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC RATGGFAGASTVATDDDYHRHPAPGEQKVDLPELRGRPYGLGPRVPMYVVSPWSRGGWVD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCC SQVYDHTSVLRLLERRFGVPAPEITPWRRAVCGDLTNAFDFRQTDARPFAAALPDVGATA CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHH ARAAALREHALPPLPATLQPPEQPFGVRRSRGLPYRPSVELTYLPERGEVNLRMANAGAA HHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCE AVLHVYDRFDLAAIPRRYTVGNDATVDGTWTTYDGRYDLWLPGPNGFHRHYRGDVGAPLL EEEEHHHHCCHHHCCCEEECCCCCEECCEEEEECCEEEEEECCCCCCHHHCCCCCCCCHH VAEIARDPNDCTCMLLSLRHGGSTAVQLELQPGAYAAAQPRERLRLAPGITEQRRWKAAA HHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCHHHHEEHCC TGGWYDLWVHHDGAAQRLAGRIETGADSVSDPAMGGPARLQQELPILIGALD CCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEEEEECC >Mature Secondary Structure MDAQRAWDHGRLGHWAAAKHNHALGYYRRADIPFQYALADAFTICDAYHAAIQTGTNSNR CCCCCCCCCCCCCCCHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCE VFLWTGGNDPQARAGGPVIGNSHDNFAELGGFAEPYHWGTYVQALQHAGVSWQIYQDMAD EEEEECCCCCCCCCCCCEECCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCEEEEHHHHHC NFTDNPLAGFAAFRQAYSAAPGHDPQLRARGVSTRGLALLREDVLGGRLPAVSYIIADAA CCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCHHHEEEECCC GSEHPDPSSPAQGAAYTARVLDALTADPAVWSRTALLVMFDENDGFFDHMPPPAPPSPDA CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCC RATGGFAGASTVATDDDYHRHPAPGEQKVDLPELRGRPYGLGPRVPMYVVSPWSRGGWVD CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCC SQVYDHTSVLRLLERRFGVPAPEITPWRRAVCGDLTNAFDFRQTDARPFAAALPDVGATA CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHH ARAAALREHALPPLPATLQPPEQPFGVRRSRGLPYRPSVELTYLPERGEVNLRMANAGAA HHHHHHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCEEEEECCCCCCEEEEEECCCCE AVLHVYDRFDLAAIPRRYTVGNDATVDGTWTTYDGRYDLWLPGPNGFHRHYRGDVGAPLL EEEEHHHHCCHHHCCCEEECCCCCEECCEEEEECCEEEEEECCCCCCHHHCCCCCCCCHH VAEIARDPNDCTCMLLSLRHGGSTAVQLELQPGAYAAAQPRERLRLAPGITEQRRWKAAA HHHHHCCCCCCEEEEEEEECCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCHHHHEEHCC TGGWYDLWVHHDGAAQRLAGRIETGADSVSDPAMGGPARLQQELPILIGALD CCCEEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2120196; 10984043 [H]