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The map label for this gene is yjbC [C]

Identifier: 21243856

GI number: 21243856

Start: 3681447

End: 3682157

Strand: Reverse

Name: yjbC [C]

Synonym: XAC3129

Alternate gene names: 21243856

Gene position: 3682157-3681447 (Counterclockwise)

Preceding gene: 21243858

Following gene: 77748698

Centisome position: 71.15

GC content: 66.1

Gene sequence:

>711_bases
ATGTCCGATCCGATCCGTCTCGATAAATGTGTAGCTGCCGCGTTCGGCTGCTCGCGTGGCGAGGCCCAGCACTACATCGA
GGGCGGGTGGGTCAGCGTGGACGGCGTGGTGGTCGAAGAACCGCAGGCGCTGGCTACCGTGGCGCAGGTCACCCTGGCCG
CAAATGCGGTGTTGGCGCCTGCCGAGCCCGCCACCTTGTTACTGCACAAGCCCGCAGGCATCTGCGCAGATGCCGCGCTG
GCGCTGGCCACGCCGGCAACGCGCAGCGCACTGGACCAGTCCGACCTACGTGTGTTGAAGCGGCACTTCCTACGCTTGCA
AGCGCCGCTGCCGCTGGAAGACGCCGCAAGCGGGCTGCTGATCCTGAGCCAGGATGGCCGCGTGCTGCGCCGGCTGAGCG
CTGACGCCAGCGCGATCGAGCAGGAATTTCTGGTTGAAGTGCAGGGTGAGCTGCGTCCCTACGGAATGGCGCGGCTGGCG
CATGGCTTGGTCTATCAGCAACGCAGTCTGTCGCCTTGCAAGGTGAGCTGGCAAAGCGAAGACCGCCTGCGGTTTGCGAT
CAAGCACGTGCAACCCGGCCAACTGCGCTACATGTGCGGCGAAGTAGGCCTGGAGGTCAGGAGCATTCGCCGCTTGCGCG
TGGGCCGGGTGTCGCTGGGCAAGCTGGCGATCGGCGAATGGCGCTACCTGCCGGCAGGTGAGCGGTTCTGA

Upstream 100 bases:

>100_bases
GCCGATCTGCGCAGGCGCACCATCGAATGCATTGCGCAGCGACTCACGCGGGCGAGCAGCCAGCACGTACACTGCCGTCC
CCTGATGCTGAGCTCGCCGC

Downstream 100 bases:

>100_bases
CTGGAGTACCGCGGCACACGGCTGCAGCCGCTGGAATCACGTAGCGCTTGTGTGCAAATGTGCTTAGCACGGCCAGCAGT
GCATGCAGCGATTATTTCTT

Product: pseudouridylate synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSDPIRLDKCVAAAFGCSRGEAQHYIEGGWVSVDGVVVEEPQALATVAQVTLAANAVLAPAEPATLLLHKPAGICADAAL
ALATPATRSALDQSDLRVLKRHFLRLQAPLPLEDAASGLLILSQDGRVLRRLSADASAIEQEFLVEVQGELRPYGMARLA
HGLVYQQRSLSPCKVSWQSEDRLRFAIKHVQPGQLRYMCGEVGLEVRSIRRLRVGRVSLGKLAIGEWRYLPAGERF

Sequences:

>Translated_236_residues
MSDPIRLDKCVAAAFGCSRGEAQHYIEGGWVSVDGVVVEEPQALATVAQVTLAANAVLAPAEPATLLLHKPAGICADAAL
ALATPATRSALDQSDLRVLKRHFLRLQAPLPLEDAASGLLILSQDGRVLRRLSADASAIEQEFLVEVQGELRPYGMARLA
HGLVYQQRSLSPCKVSWQSEDRLRFAIKHVQPGQLRYMCGEVGLEVRSIRRLRVGRVSLGKLAIGEWRYLPAGERF
>Mature_235_residues
SDPIRLDKCVAAAFGCSRGEAQHYIEGGWVSVDGVVVEEPQALATVAQVTLAANAVLAPAEPATLLLHKPAGICADAALA
LATPATRSALDQSDLRVLKRHFLRLQAPLPLEDAASGLLILSQDGRVLRRLSADASAIEQEFLVEVQGELRPYGMARLAH
GLVYQQRSLSPCKVSWQSEDRLRFAIKHVQPGQLRYMCGEVGLEVRSIRRLRVGRVSLGKLAIGEWRYLPAGERF

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790453, Length=235, Percent_Identity=25.531914893617, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496
- InterPro:   IPR002942 [H]

Pfam domain/function: PF00849 PseudoU_synth_2; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 25697; Mature: 25566

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPIRLDKCVAAAFGCSRGEAQHYIEGGWVSVDGVVVEEPQALATVAQVTLAANAVLAP
CCCCHHHHHHHHHHHCCCCCCCCCEECCCEEEECCEEEECCHHHHHHHHHHHHHCEEECC
AEPATLLLHKPAGICADAALALATPATRSALDQSDLRVLKRHFLRLQAPLPLEDAASGLL
CCCCEEEEECCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCEE
ILSQDGRVLRRLSADASAIEQEFLVEVQGELRPYGMARLAHGLVYQQRSLSPCKVSWQSE
EECCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
DRLRFAIKHVQPGQLRYMCGEVGLEVRSIRRLRVGRVSLGKLAIGEWRYLPAGERF
CCEEEHHHCCCCCHHHHHHHHHCHHHHHHHHHHCCCEEECCEEECCEEECCCCCCC
>Mature Secondary Structure 
SDPIRLDKCVAAAFGCSRGEAQHYIEGGWVSVDGVVVEEPQALATVAQVTLAANAVLAP
CCCHHHHHHHHHHHCCCCCCCCCEECCCEEEECCEEEECCHHHHHHHHHHHHHCEEECC
AEPATLLLHKPAGICADAALALATPATRSALDQSDLRVLKRHFLRLQAPLPLEDAASGLL
CCCCEEEEECCCCCHHHHHHHHCCCHHHHHCCHHHHHHHHHHHHHCCCCCCHHHCCCCEE
ILSQDGRVLRRLSADASAIEQEFLVEVQGELRPYGMARLAHGLVYQQRSLSPCKVSWQSE
EECCCCHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC
DRLRFAIKHVQPGQLRYMCGEVGLEVRSIRRLRVGRVSLGKLAIGEWRYLPAGERF
CCEEEHHHCCCCCHHHHHHHHHCHHHHHHHHHHCCCEEECCEEECCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]