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The map label for this gene is yqgF [C]

Identifier: 21243644

GI number: 21243644

Start: 3425195

End: 3425662

Strand: Reverse

Name: yqgF [C]

Synonym: XAC2917

Alternate gene names: 21243644

Gene position: 3425662-3425195 (Counterclockwise)

Preceding gene: 21243645

Following gene: 21243643

Centisome position: 66.19

GC content: 70.73

Gene sequence:

>468_bases
ATGCCTGAGGCGGGCGCGATCCGCCCCGATGGCACGGTGCTGGGCTTCGATGTGGGGTCGCGCCGGATCGGTGTGGCGGT
CGGAAGCGCGCTTGGCGCCGGCGCGCGCGCGGTGGCCGTTATCAATGTGCATGCCAACGGCCCGGACTGGGTCGCGCTGG
ATCGCGTGCACAAGCAATGGCGCCCCGACGGCCTGGTGGTCGGTGACCCGCTGACCCTGGACGACAAGGACCAGCCCGCA
CGCAAGCGCGCGCATGCCTTCGCCCGCCAATTGCGCGAGCGCTATGCGCTGCCGGTGGTGCTGATCGACGAGCGCTCCAG
TTCGGTCGAAGCCGCGCAGCGCTTCGCGCGCGAGCGTGCCGATGGGCGCAAGCGCCGCCGCGATGCCGAAGCGCTCGATG
CGATGGCCGCCGCAGTGATCGTCGAACGCTGGTTGGCCGCACCCGACCAAGCCACCCTTCTTCCTTGA

Upstream 100 bases:

>100_bases
GATGCCAATGTGCTGTTCGCCACCGCGCTGGAAGATCGCTGGCAGACCGCTGCCGGGCGTATTGGCGTGGATCTGTTCCG
GCTGACGGATTATTCCGGGC

Downstream 100 bases:

>100_bases
CTCCCGACCTGCGATGACCACCATGCAACTCGATTCGGACGGACGCTTGCGCCACCTGCTCACCCTGGAAGGACTTCCGC
GCACCACGCTGCTGCAATTG

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MPEAGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWVALDRVHKQWRPDGLVVGDPLTLDDKDQPA
RKRAHAFARQLRERYALPVVLIDERSSSVEAAQRFARERADGRKRRRDAEALDAMAAAVIVERWLAAPDQATLLP

Sequences:

>Translated_155_residues
MPEAGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWVALDRVHKQWRPDGLVVGDPLTLDDKDQPA
RKRAHAFARQLRERYALPVVLIDERSSSVEAAQRFARERADGRKRRRDAEALDAMAAAVIVERWLAAPDQATLLP
>Mature_154_residues
PEAGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWVALDRVHKQWRPDGLVVGDPLTLDDKDQPAR
KRAHAFARQLRERYALPVVLIDERSSSVEAAQRFARERADGRKRRRDAEALDAMAAAVIVERWLAAPDQATLLP

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=37.037037037037, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_XANAC (Q8PII0)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_643226.1
- ProteinModelPortal:   Q8PII0
- SMR:   Q8PII0
- GeneID:   1156988
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC2917
- NMPDR:   fig|190486.1.peg.2870
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- BioCyc:   XAXO190486:XAC2917-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16786; Mature: 16655

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPEAGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWVALDRVHKQW
CCCCCCCCCCCCEEEECCCCCEEHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHC
RPDGLVVGDPLTLDDKDQPARKRAHAFARQLRERYALPVVLIDERSSSVEAAQRFARERA
CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
DGRKRRRDAEALDAMAAAVIVERWLAAPDQATLLP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PEAGAIRPDGTVLGFDVGSRRIGVAVGSALGAGARAVAVINVHANGPDWVALDRVHKQW
CCCCCCCCCCCEEEECCCCCEEHHHHHHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHC
RPDGLVVGDPLTLDDKDQPARKRAHAFARQLRERYALPVVLIDERSSSVEAAQRFARERA
CCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHH
DGRKRRRDAEALDAMAAAVIVERWLAAPDQATLLP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217