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The map label for this gene is ygdH [H]

Identifier: 21243400

GI number: 21243400

Start: 3128921

End: 3130267

Strand: Reverse

Name: ygdH [H]

Synonym: XAC2671

Alternate gene names: 21243400

Gene position: 3130267-3128921 (Counterclockwise)

Preceding gene: 21243401

Following gene: 21243398

Centisome position: 60.48

GC content: 64.81

Gene sequence:

>1347_bases
GTGGATGCGCGGATCTACCCGCGTGGTGGTCTGGATGTGTTGTCCAAGGCAGAAGTAGCCCGGTTGCGGGACGCATCCAG
TGGTGGCATGCATGAGCTGTTGCGCCGTTGCGCGCTGGCCGTGCTGACCAGCGGAAGCGCATCGGACGACCCGCGCGCCG
CGCGCGATCTCTACCCGGATTTCGACATCCAGGTGAACCAGCAGGATCGCGGCATCCGCATCGATCTGACCAACGCGCCG
GCAATGGCTTTCGTCGATGGCGAGATCATCCGCGGCGTGGCGGAGCTGTTGTTTGCCGTCGTGCGCGACCTCGCTTACAT
GGCCATCGAGCTCGAAGCGCAACGCGCCGATCTGGACACCAGCGAAGGCATCACCAATGCCGTGTTCGGTCAGCTGCGTA
ATGCACGCATCCTGCAGCCGTTGGACCCGAACCTGGTCGTGTGTTGGGGCGGCCATTCCATCTCGCGCGACGAATACCTG
TACACCAAGCAGGTCGGCTACGAGCTCGGCCTGCGCGGGCTGGATATCTGCACCGGCTGCGGCCCAGGCGCCATGAAGGG
TCCGATGAAGGGCGCCACCATCGCGCATGCCAAGCAGCGCAAGCACAATACCCGCTACATCGGGGTCACCGAGCCCGGCA
TCATCGCCGCCGAATCGCCGAACCCGATCGTCAACCATCTGGTGATCATGCCGGACATCGAGAAGCGCCTTGAGGCCTTC
GTCCGCATCGGGCACGGCATCCTGGTATTCCCGGGCGGCGTCGGCACCGCGGAGGAAATTCTCTACCTGCTCGGTATCCT
GCTACGCGAAGAAAACGCGGACGTGCCGTTCCCGCTGATCCTCACTGGCCCGACCATCGCCGCGCCGTACTTCGAGCAGA
TCGACCGTTTCATTCGCCTCACCCTGGGGGACGCTGCCGCCTCGCGCTACGAGATCATCGTCGGCGACCCAGTCGCCGTG
GCGCGCCGCATGGCCGAAGGGGTGCACGCAGTGCGCGCGCACCGCAAGGACCAGAAAGACTCGTATTACTTCAACTGGTC
CGTGCACATCCCGCTCGAGTATCAGCAACAGTTCGAGCCCAGCCACGAAGCGATGGCCGCACTGGACCTGCACCACGGCC
GCCCGGCGCCGGCCCTGGCCGCCGACCTGCGCCGCGCCTTCTCCGGCATCGTGGCCGGCAACGTCAAGGAAGACGGCATG
CGTCGCATCGAGGAATTCGGCCCCTTCGAAATCCACGGCGACCCCGAGATCATGCAGGCCCTGGACGAACTCCTGCGCGG
CTTTGTCGAGCAGCGCCGGATGAAGATCTCTGGGGACTATCGGCCTTGTTATCGGGTGGTGACCTAG

Upstream 100 bases:

>100_bases
GGCCGTTTTCTTTTGTGCGGGTGAGTACGCTAAAGTTCCGTGCATACGACAGGAGCATGCTATGGAACTCAGCAGTACGG
CAGCACGGGCGCTGCCGGTG

Downstream 100 bases:

>100_bases
ATTAGCGAGACGGTATCTCTGCGAGCGGGGCATGCAGGGTAGCCAGAAACTGGTTGCCCTGCGTCGTAGTTTGAAGTCCC
ATTCTGCTGTCAAGATCGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSASDDPRAARDLYPDFDIQVNQQDRGIRIDLTNAP
AMAFVDGEIIRGVAELLFAVVRDLAYMAIELEAQRADLDTSEGITNAVFGQLRNARILQPLDPNLVVCWGGHSISRDEYL
YTKQVGYELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHLVIMPDIEKRLEAF
VRIGHGILVFPGGVGTAEEILYLLGILLREENADVPFPLILTGPTIAAPYFEQIDRFIRLTLGDAAASRYEIIVGDPVAV
ARRMAEGVHAVRAHRKDQKDSYYFNWSVHIPLEYQQQFEPSHEAMAALDLHHGRPAPALAADLRRAFSGIVAGNVKEDGM
RRIEEFGPFEIHGDPEIMQALDELLRGFVEQRRMKISGDYRPCYRVVT

Sequences:

>Translated_448_residues
MDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSASDDPRAARDLYPDFDIQVNQQDRGIRIDLTNAP
AMAFVDGEIIRGVAELLFAVVRDLAYMAIELEAQRADLDTSEGITNAVFGQLRNARILQPLDPNLVVCWGGHSISRDEYL
YTKQVGYELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHLVIMPDIEKRLEAF
VRIGHGILVFPGGVGTAEEILYLLGILLREENADVPFPLILTGPTIAAPYFEQIDRFIRLTLGDAAASRYEIIVGDPVAV
ARRMAEGVHAVRAHRKDQKDSYYFNWSVHIPLEYQQQFEPSHEAMAALDLHHGRPAPALAADLRRAFSGIVAGNVKEDGM
RRIEEFGPFEIHGDPEIMQALDELLRGFVEQRRMKISGDYRPCYRVVT
>Mature_448_residues
MDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSASDDPRAARDLYPDFDIQVNQQDRGIRIDLTNAP
AMAFVDGEIIRGVAELLFAVVRDLAYMAIELEAQRADLDTSEGITNAVFGQLRNARILQPLDPNLVVCWGGHSISRDEYL
YTKQVGYELGLRGLDICTGCGPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHLVIMPDIEKRLEAF
VRIGHGILVFPGGVGTAEEILYLLGILLREENADVPFPLILTGPTIAAPYFEQIDRFIRLTLGDAAASRYEIIVGDPVAV
ARRMAEGVHAVRAHRKDQKDSYYFNWSVHIPLEYQQQFEPSHEAMAALDLHHGRPAPALAADLRRAFSGIVAGNVKEDGM
RRIEEFGPFEIHGDPEIMQALDELLRGFVEQRRMKISGDYRPCYRVVT

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=454, Percent_Identity=54.8458149779736, Blast_Score=503, Evalue=1e-143,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 49499; Mature: 49499

Theoretical pI: Translated: 6.07; Mature: 6.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSASDDPRAARDLYPD
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCC
FDIQVNQQDRGIRIDLTNAPAMAFVDGEIIRGVAELLFAVVRDLAYMAIELEAQRADLDT
CCEEECCCCCCEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCC
SEGITNAVFGQLRNARILQPLDPNLVVCWGGHSISRDEYLYTKQVGYELGLRGLDICTGC
CCCHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCEEEHHHHHHHHCCCCCHHCCCC
GPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHLVIMPDIEKRLEAF
CCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEECCCCHHHHEEEECCCHHHHHHHH
VRIGHGILVFPGGVGTAEEILYLLGILLREENADVPFPLILTGPTIAAPYFEQIDRFIRL
HHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
TLGDAAASRYEIIVGDPVAVARRMAEGVHAVRAHRKDQKDSYYFNWSVHIPLEYQQQFEP
HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEHHHHHCCC
SHEAMAALDLHHGRPAPALAADLRRAFSGIVAGNVKEDGMRRIEEFGPFEIHGDPEIMQA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCHHHHHH
LDELLRGFVEQRRMKISGDYRPCYRVVT
HHHHHHHHHHHHHEEECCCCCCHHEECC
>Mature Secondary Structure
MDARIYPRGGLDVLSKAEVARLRDASSGGMHELLRRCALAVLTSGSASDDPRAARDLYPD
CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCC
FDIQVNQQDRGIRIDLTNAPAMAFVDGEIIRGVAELLFAVVRDLAYMAIELEAQRADLDT
CCEEECCCCCCEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHEEEEHHHCCCCC
SEGITNAVFGQLRNARILQPLDPNLVVCWGGHSISRDEYLYTKQVGYELGLRGLDICTGC
CCCHHHHHHHHHCCCEEECCCCCCEEEEECCCCCCCCCEEEHHHHHHHHCCCCCHHCCCC
GPGAMKGPMKGATIAHAKQRKHNTRYIGVTEPGIIAAESPNPIVNHLVIMPDIEKRLEAF
CCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCEEEECCCCHHHHEEEECCCHHHHHHHH
VRIGHGILVFPGGVGTAEEILYLLGILLREENADVPFPLILTGPTIAAPYFEQIDRFIRL
HHHCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
TLGDAAASRYEIIVGDPVAVARRMAEGVHAVRAHRKDQKDSYYFNWSVHIPLEYQQQFEP
HHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEHHHHHCCC
SHEAMAALDLHHGRPAPALAADLRRAFSGIVAGNVKEDGMRRIEEFGPFEIHGDPEIMQA
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEEECCCHHHHHH
LDELLRGFVEQRRMKISGDYRPCYRVVT
HHHHHHHHHHHHHEEECCCCCCHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]