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The map label for this gene is virD4 [H]

Identifier: 21243354

GI number: 21243354

Start: 3088230

End: 3089903

Strand: Reverse

Name: virD4 [H]

Synonym: XAC2623

Alternate gene names: 21243354

Gene position: 3089903-3088230 (Counterclockwise)

Preceding gene: 21243355

Following gene: 21243353

Centisome position: 59.7

GC content: 58.84

Gene sequence:

>1674_bases
ATGTCCAAACCCAAAATCATCGCAATTGCCACGCTGGTGGCGGTTCTAGCCGGATATTGCCTGTCCGGCTATCTGACCCT
GCTGTTGCTGCGGCTCGACACCGGTCTGTACGGGTGGGACACCTACTACCGCTATTTCAGCGCGCTTGGGTTGCCCCAAG
TGGCGCCTTACGCGACCAAGATCAAGATTGCGGGCGTGCTTGGATTCGGGCTGCCGGTGCTGGTCTGGGCGATTGCCGTT
GTGCTCATCGTCAAGCCCAAGGCGCGCGCCCTGCACGGTGACGCGCGCTTCGCCGGCGCCGCCGATCTCTCCAAGCACGG
GCTGTTCAAGCCCAGCGGAAACGGCATCGTCGTCGGCAAGTTCAACGGCAAGCTGGTGCGATTGAGCGGCCAGCAATTCG
TGATTCTTGCTGCACCGACGCGCTCGGGTAAGGGCGTCGGTGTCGTCATCCCGAACCTCTTGGAGTATCAAGAGTCGGTC
GTGGTCCTGGACATCAAGCAGGAGAACTTCGACCTGACCAGTGGCTGGCGTGCCAGCCAGGGCCACGAGGTCTTCCTGTT
CAATCCGTTCGCCGAAGACCGTCGCACGCATCGCTGGAATCCATTGACCTATGTGTCGAACGATCCCGCATTTCGCGTTT
CGGATTTGATGAGCATCGCAGCGATGTTGTACCCGGACGGATCCGACGACCAGAAGTTCTGGGTGAGCCAGGCGCGCAAC
GCCTTCATGGCGTTCGCGTTGTACCTGTTCGAAAACTGGGACGAGGAGCTCTCGCTCGGTTTTCCGGGTGGGGCAGGAGC
ACCCACCTTGGGCGGAATTTATCGCCTTTCGTCGGGTGACGGCACCGATCTCAAGAAATATCTGAAGTCGCTGTCCGAGC
GGCGGTTCCTCAGCAGCAACGCCAAGTCGGCCTTTGCCAACCTGCTGTCACAGGCGGATGAGACCTTCGCCTCGATCATG
GGCACCTTGAAGGAGCCGCTCAATGCGTGGATCAATCCGGTTCTGGACGCTGCAACCAGTGCGGACGACTTCGTGCTCAC
GGACCTTCGCAAGAAGAAGATGACCATCTACATCGGCATCCAGCCCAACAAGCTGGCCGAAAGCCGCCTGATCATCAACC
TGCTCTTCAGCCAGATCATCAACCTCAACACCCGCGAACTGCCCAAATCCAACCCCGAGCTCAAGTACCAGTGCCTGCTG
CTGATGGACGAATTCACCTCGATCGGCAAGGTGGACATCATCGCGACCGCGGTAGCCTACATGGCCGGCTACAACATCCG
CCTGCTGCCCATCATCCAAAGCATGGCCCAGCTGGACGCGACCTACGGCAAAGATCTGTCACGCACCATCATCACCAATC
ACGCCCTGCAGATCCTTTACGCACCACGCGAACAGCAGGACGCCAACGACTATTCCGAGATGCTGGGATACACCACCATC
AAGAAGAAGAACGTCACCAGAGGGCGGGAGACCACCCATAGCGTGTCAGAAGAACGCCGGGCGCTGATGTTGCCGCAGGA
GCTCAAGGCGATGGGCAATGAAAAGGAAGTGTTCTTGTACGAGGGAATCCCGCACCCGGTGAAGTGCGACAAGATCCGCT
ACTACGAGGATCGCCACTTCACTGCGCGCTTGTTGCCGAAAACCGAAGTGAAGACGCTTACCATCAGAATGTGA

Upstream 100 bases:

>100_bases
GGAGAGCGAGAGTGGCGGGCGCAAGTCCGGCCTTGTCGACCATAAGCCGGTCGTGCGTCGCTAGCCCGCCATCGTGATGC
AAGCCTAAGGAGAAGGGCGC

Downstream 100 bases:

>100_bases
TTTGTGTCTCGTTTGCAGCGCAGGGCTTAGCGCGCAATTCTTGACGGATCTGCTTGTTAAGGGCAAAGTTAGCAAGAGTC
TGCGGTTTAGATCGATGGTC

Product: VirD4 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 556

Protein sequence:

>557_residues
MSKPKIIAIATLVAVLAGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATKIKIAGVLGFGLPVLVWAIAV
VLIVKPKARALHGDARFAGAADLSKHGLFKPSGNGIVVGKFNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESV
VVLDIKQENFDLTSGWRASQGHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
AFMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFANLLSQADETFASIM
GTLKEPLNAWINPVLDAATSADDFVLTDLRKKKMTIYIGIQPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLL
LMDEFTSIGKVDIIATAVAYMAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRHFTARLLPKTEVKTLTIRM

Sequences:

>Translated_557_residues
MSKPKIIAIATLVAVLAGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATKIKIAGVLGFGLPVLVWAIAV
VLIVKPKARALHGDARFAGAADLSKHGLFKPSGNGIVVGKFNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESV
VVLDIKQENFDLTSGWRASQGHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
AFMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFANLLSQADETFASIM
GTLKEPLNAWINPVLDAATSADDFVLTDLRKKKMTIYIGIQPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLL
LMDEFTSIGKVDIIATAVAYMAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRHFTARLLPKTEVKTLTIRM
>Mature_556_residues
SKPKIIAIATLVAVLAGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATKIKIAGVLGFGLPVLVWAIAVV
LIVKPKARALHGDARFAGAADLSKHGLFKPSGNGIVVGKFNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESVV
VLDIKQENFDLTSGWRASQGHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARNA
FMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSNAKSAFANLLSQADETFASIMG
TLKEPLNAWINPVLDAATSADDFVLTDLRKKKMTIYIGIQPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLLL
MDEFTSIGKVDIIATAVAYMAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTIK
KKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRHFTARLLPKTEVKTLTIRM

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 62036; Mature: 61904

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS00178 AA_TRNA_LIGASE_I ; PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPKIIAIATLVAVLAGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATK
CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEE
IKIAGVLGFGLPVLVWAIAVVLIVKPKARALHGDARFAGAADLSKHGLFKPSGNGIVVGK
EEEEEHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEEE
FNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESVVVLDIKQENFDLTSGWRASQ
CCCEEEEECCCEEEEEEECCCCCCEEEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCCC
GHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
CCEEEEECCCHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AFMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSN
HHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
AKSAFANLLSQADETFASIMGTLKEPLNAWINPVLDAATSADDFVLTDLRKKKMTIYIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEEEE
QPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLLLMDEFTSIGKVDIIATAVAY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHH
MAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
HHCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCHHE
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRHF
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCCC
TARLLPKTEVKTLTIRM
EEEECCCCCEEEEEEEC
>Mature Secondary Structure 
SKPKIIAIATLVAVLAGYCLSGYLTLLLLRLDTGLYGWDTYYRYFSALGLPQVAPYATK
CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCEE
IKIAGVLGFGLPVLVWAIAVVLIVKPKARALHGDARFAGAADLSKHGLFKPSGNGIVVGK
EEEEEHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCHHHCCCCCCCCCEEEEEE
FNGKLVRLSGQQFVILAAPTRSGKGVGVVIPNLLEYQESVVVLDIKQENFDLTSGWRASQ
CCCEEEEECCCEEEEEEECCCCCCEEEEECCHHHCCCCCEEEEEEECCCCCCCCCCCCCC
GHEVFLFNPFAEDRRTHRWNPLTYVSNDPAFRVSDLMSIAAMLYPDGSDDQKFWVSQARN
CCEEEEECCCHHCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
AFMAFALYLFENWDEELSLGFPGGAGAPTLGGIYRLSSGDGTDLKKYLKSLSERRFLSSN
HHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCC
AKSAFANLLSQADETFASIMGTLKEPLNAWINPVLDAATSADDFVLTDLRKKKMTIYIGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCEEEEEEEE
QPNKLAESRLIINLLFSQIINLNTRELPKSNPELKYQCLLLMDEFTSIGKVDIIATAVAY
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCHHHHHHHHHH
MAGYNIRLLPIIQSMAQLDATYGKDLSRTIITNHALQILYAPREQQDANDYSEMLGYTTI
HHCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCCCCCHHHHHHHHCCHHE
KKKNVTRGRETTHSVSEERRALMLPQELKAMGNEKEVFLYEGIPHPVKCDKIRYYEDRHF
ECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCCC
TARLLPKTEVKTLTIRM
EEEECCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3185501 [H]