| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
Click here to switch to the map view.
The map label for this gene is btuB [H]
Identifier: 21243268
GI number: 21243268
Start: 2982897
End: 2985713
Strand: Reverse
Name: btuB [H]
Synonym: XAC2535
Alternate gene names: 21243268
Gene position: 2985713-2982897 (Counterclockwise)
Preceding gene: 21243269
Following gene: 21243267
Centisome position: 57.69
GC content: 63.4
Gene sequence:
>2817_bases ATGTCGTCCAGCCGCACTGCTGTTGTTCCCAAACGAGGTGTCTTGCAGACCACCAGGCTCGTCACTGCTGTGTCGTTTGC ACTGGCGGTCGCCGCCGTGCCGGCCGCCGCGCAACAGCGTGGCGATGGCGCAGACGATGCCACCCAGACCTTGGATCAGG TCAACGTCACCGGCACCCATCTGCGCCGTGTCGACGCCGAAACCGCCAGCCCGGTCGTGGTGATCGACCGGCAGCGTATC GAAGACAGTGGGCAGAACACGCTGGGGCAGTTGCTGCAGCGCTTGCCGATGATGGCCGGCTTCCAGGCCGGGCCTGCACT CAATTCCGGTTTCAGTCACGGCCGCGCGCTGGTGTCGCTACGCAATCTCGGGCCAGAGCGCACGTTGGTGCTGGTCAACG GCCATCGCATGGCAGGGCCTGCCAGCAGCGTGGCGTCGGCGCCCGGCGTGGACGTCAATGCAATCCCCGCAGCGATGGTG GAGCGCGTGGAAGTGCTCACCGACGGTGCGTCGTCGGTGTACGGCTCCGATGCGATCGGCGGGGTGGTCAATGTCATCCT CAAGGACAGATACGACGGATTCGCCGCCACCGTGGACTACGCGCAGAGCACCCATGGCGATGCCAATCGACGCACGCTCG GGCTGGAATGGGGCAAGACCTGGGACCGCGGCGGGCTGATCCTGGGGCTCAGCCGCAATTCGATGAACCCGGTGTTCAAT CGCGACCGCAGTTACGCCGCCAAGGCGGTGGAATATCTCGATGGGCAGGTCAGCGAGATTCGCGGCGGCAATACGCGCGC CTTCCTGACCGATGGGCGCCGGGTGACCCCGGTCGATGGCGTGCGGCCCGGGCCGGTGGGCCAGGACGCATTCCGCCCGT ATCAACCGGCCACAGACAGCTATAACGTCTACGATGCGCAGTACCTGATCACTCCGATCAAACGCACCAATGCCTCGCTG CACGGCAGTTTCGACTTCACTCCCGGCGTGCAGGGCTACATGGACGTGTTCTGGACCCGCAGCAAGACCATCTCGCGGCT GGATGCGTACGCCATGGAGATGCAGGACGCAGTGGACAACTACTACAACCCGTTCGGCGATGCGCTGGACCGTTACCTGT TGCGCTCCACTCAGGCCAATACGCGCGTCTACACCTCCACCATGTTCCAGACCAATGTCGTGGCCGGCTTGCGCGGGCGC GTGGACGGCAGCAGTTGGCAATGGGATGCGGCGGCCGGCTATGCACGCTACAAGGACACCTTGGTGCGCACCGGTTTTTC GATCACCTCGGCGTTGAATAACGCGGTAGGCGCTTCGTTCCTGGACAGCGATGGGGTGGTGAAGTGCGGCGCGCCGGGCG CCGTGATCGCCGGCTGCACGCCGATCAATATCTTCAACCCCAACGACCCGGCCACCATCGCCGCATTGCGAGACACGCAG CGACCGGTGGACCTGATCGACGAAAGCCAGATGCGCTTTGTCGATATCAGCGCCAATGGCGATCTGTTCAAACTGCCGGC CGGAATGGTGCAGGCAGCCGTCGGCCTGGTGTATCGCACCAACAAGTTCGCGCAGGGGACGACCAGCGATGTGGCCGCTG CCGATGCCGATGGCAATTGCGACTACAACGATGGCTGCATCCTCAAGCAGGGGCGCGAGGAGTCGGTCAGGGAAGCCTAT GCGGAATTGCTGGTGCCGCTGTTGAGGGATGCGCCGTTCGCCAATGTGTTGAACCTGAATCTGGGCTCGCGCTATTCCAA CTACGACGCCTGGGGCAATACCACCAACAGCAAGGTTGCGATCGAATGGCGGCCGATCGCGAATCTATTGGTGCGTGCCA CCGGCTCGCAGGTGTTCCGGGCGCCGGCGTTGGGTGATTTGTATGGCTCGCCCTACAACAGCGTGGTCGACAACACGGGC GACTTCGAGGACCCGTGCACGGGCTTTACCGGCGCGCCGAATCCGGCCTGCGCAAACGTGCCCAACGATGGCAGCTACAC CAACACCGCGCAGTTCAACGTGGTGACCTCCGGCGCCAATAACGTGGGCTTCAAGCTCAAGCCCGAGCGTGGCCGCTCTT ACAATGTGGGGCTGGTCTACGACCCGGATCGGGTGCGCGGGCTATCGCTCAACGTGGACAGCTGGCGAGTCGTGCTGGAC GACATGCTGACCGGTGTCGGCTTGCAGCAGGTCGTCAGCGATTGCTTCGACGGCAGCGAAGCCGCGTTCTGCCCGCTGAT TCAACGCGATGCCAACGGACAGCTGACGCGGGTGTCGGTGCCGTTCGCATACAACAGCGGCAAGGTCGATATTCGCGGCT ACGACGCTGGCATTCACTACACGCTGGCCGACACCGCCTGGGGCACGTTTGCGATGGGACTGGATGCAACGTTCTTCTCC AGCTATCGCTTTGCGGGCGATCCGCATAACTACGTCGGCGAAAATTCCAGCTGGGGCAACATGCCGCGCTGGCGCGCCGT GGCCAATCTGGCCTGGGACAACGGCCCGTGGCATGCGAGCTGGAACACCCGCTATCTGGGCCGCACCGTCAACGGTAGCC AGTACGAAGATTTTTGCGCGGACACCAATGCCGACGGCAGTTGCGCGTATTTCCGGATTGGCTCGGTGGTGTACCACGAC GCCTCGTTGAGCCGGAAGATCGCATCGCTGCATAGCACGCTGGCGGTGGGCATCGACAATCTTGGCGACCGCAAGCCGCC ACGGTTCTATAGCTACTCCAATGCTGCCAATACCGAAGCGAGCACCTACGACACGCTCGGGCGCTATGTCTGGAGCCGGC TGCGAGTGGAGTTTTAG
Upstream 100 bases:
>100_bases GTGATCGATCCCTCCGTCTGTGCGTTGTGCCGGTGCGGCTTGGCCGTGCGCGGCCGTGCAGGAAGGTGGGCCGTACCCTG TGTCAGCACAAGGATTTCCG
Downstream 100 bases:
>100_bases AGCGGCAAAAAAGACAGCAAGCAGGTGTCGGGCGGAGTAGACAGCGCACTTGGAACGCAGTGGACGCGCGGCACGTGCCG CACCGAGCAAGGGGGCGCCT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 938; Mature: 937
Protein sequence:
>938_residues MSSSRTAVVPKRGVLQTTRLVTAVSFALAVAAVPAAAQQRGDGADDATQTLDQVNVTGTHLRRVDAETASPVVVIDRQRI EDSGQNTLGQLLQRLPMMAGFQAGPALNSGFSHGRALVSLRNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMV ERVEVLTDGASSVYGSDAIGGVVNVILKDRYDGFAATVDYAQSTHGDANRRTLGLEWGKTWDRGGLILGLSRNSMNPVFN RDRSYAAKAVEYLDGQVSEIRGGNTRAFLTDGRRVTPVDGVRPGPVGQDAFRPYQPATDSYNVYDAQYLITPIKRTNASL HGSFDFTPGVQGYMDVFWTRSKTISRLDAYAMEMQDAVDNYYNPFGDALDRYLLRSTQANTRVYTSTMFQTNVVAGLRGR VDGSSWQWDAAAGYARYKDTLVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIAGCTPINIFNPNDPATIAALRDTQ RPVDLIDESQMRFVDISANGDLFKLPAGMVQAAVGLVYRTNKFAQGTTSDVAAADADGNCDYNDGCILKQGREESVREAY AELLVPLLRDAPFANVLNLNLGSRYSNYDAWGNTTNSKVAIEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVVDNTG DFEDPCTGFTGAPNPACANVPNDGSYTNTAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDRVRGLSLNVDSWRVVLD DMLTGVGLQQVVSDCFDGSEAAFCPLIQRDANGQLTRVSVPFAYNSGKVDIRGYDAGIHYTLADTAWGTFAMGLDATFFS SYRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHASWNTRYLGRTVNGSQYEDFCADTNADGSCAYFRIGSVVYHD ASLSRKIASLHSTLAVGIDNLGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF
Sequences:
>Translated_938_residues MSSSRTAVVPKRGVLQTTRLVTAVSFALAVAAVPAAAQQRGDGADDATQTLDQVNVTGTHLRRVDAETASPVVVIDRQRI EDSGQNTLGQLLQRLPMMAGFQAGPALNSGFSHGRALVSLRNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMV ERVEVLTDGASSVYGSDAIGGVVNVILKDRYDGFAATVDYAQSTHGDANRRTLGLEWGKTWDRGGLILGLSRNSMNPVFN RDRSYAAKAVEYLDGQVSEIRGGNTRAFLTDGRRVTPVDGVRPGPVGQDAFRPYQPATDSYNVYDAQYLITPIKRTNASL HGSFDFTPGVQGYMDVFWTRSKTISRLDAYAMEMQDAVDNYYNPFGDALDRYLLRSTQANTRVYTSTMFQTNVVAGLRGR VDGSSWQWDAAAGYARYKDTLVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIAGCTPINIFNPNDPATIAALRDTQ RPVDLIDESQMRFVDISANGDLFKLPAGMVQAAVGLVYRTNKFAQGTTSDVAAADADGNCDYNDGCILKQGREESVREAY AELLVPLLRDAPFANVLNLNLGSRYSNYDAWGNTTNSKVAIEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVVDNTG DFEDPCTGFTGAPNPACANVPNDGSYTNTAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDRVRGLSLNVDSWRVVLD DMLTGVGLQQVVSDCFDGSEAAFCPLIQRDANGQLTRVSVPFAYNSGKVDIRGYDAGIHYTLADTAWGTFAMGLDATFFS SYRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHASWNTRYLGRTVNGSQYEDFCADTNADGSCAYFRIGSVVYHD ASLSRKIASLHSTLAVGIDNLGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF >Mature_937_residues SSSRTAVVPKRGVLQTTRLVTAVSFALAVAAVPAAAQQRGDGADDATQTLDQVNVTGTHLRRVDAETASPVVVIDRQRIE DSGQNTLGQLLQRLPMMAGFQAGPALNSGFSHGRALVSLRNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMVE RVEVLTDGASSVYGSDAIGGVVNVILKDRYDGFAATVDYAQSTHGDANRRTLGLEWGKTWDRGGLILGLSRNSMNPVFNR DRSYAAKAVEYLDGQVSEIRGGNTRAFLTDGRRVTPVDGVRPGPVGQDAFRPYQPATDSYNVYDAQYLITPIKRTNASLH GSFDFTPGVQGYMDVFWTRSKTISRLDAYAMEMQDAVDNYYNPFGDALDRYLLRSTQANTRVYTSTMFQTNVVAGLRGRV DGSSWQWDAAAGYARYKDTLVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIAGCTPINIFNPNDPATIAALRDTQR PVDLIDESQMRFVDISANGDLFKLPAGMVQAAVGLVYRTNKFAQGTTSDVAAADADGNCDYNDGCILKQGREESVREAYA ELLVPLLRDAPFANVLNLNLGSRYSNYDAWGNTTNSKVAIEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVVDNTGD FEDPCTGFTGAPNPACANVPNDGSYTNTAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDRVRGLSLNVDSWRVVLDD MLTGVGLQQVVSDCFDGSEAAFCPLIQRDANGQLTRVSVPFAYNSGKVDIRGYDAGIHYTLADTAWGTFAMGLDATFFSS YRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHASWNTRYLGRTVNGSQYEDFCADTNADGSCAYFRIGSVVYHDA SLSRKIASLHSTLAVGIDNLGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=190, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=1e-11, Organism=Escherichia coli, GI1790405, Length=138, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 101434; Mature: 101302
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSSRTAVVPKRGVLQTTRLVTAVSFALAVAAVPAAAQQRGDGADDATQTLDQVNVTGTH CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCHHH LRRVDAETASPVVVIDRQRIEDSGQNTLGQLLQRLPMMAGFQAGPALNSGFSHGRALVSL HEEECCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH RNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMVERVEVLTDGASSVYGSDAIG HHCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCHHHH GVVNVILKDRYDGFAATVDYAQSTHGDANRRTLGLEWGKTWDRGGLILGLSRNSMNPVFN HHHHHHHHHCCCCEEEEEHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHC RDRSYAAKAVEYLDGQVSEIRGGNTRAFLTDGRRVTPVDGVRPGPVGQDAFRPYQPATDS CCHHHHHHHHHHHCCHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCHHHCCCCCCCCCC YNVYDAQYLITPIKRTNASLHGSFDFTPGVQGYMDVFWTRSKTISRLDAYAMEMQDAVDN CCEEECEEEEEEHHHCCCCEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH YYNPFGDALDRYLLRSTQANTRVYTSTMFQTNVVAGLRGRVDGSSWQWDAAAGYARYKDT HCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHH LVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIAGCTPINIFNPNDPATIAALRDTQ HHHCCCHHHHHHHHHHCCCEECCCCEEEECCCCCEEECCEEEEEECCCCCEEEEEECCCC RPVDLIDESQMRFVDISANGDLFKLPAGMVQAAVGLVYRTNKFAQGTTSDVAAADADGNC CCHHHHCCCCEEEEEEECCCCEEECCHHHHHHHHHHHEECCCCCCCCCCCCEECCCCCCC DYNDGCILKQGREESVREAYAELLVPLLRDAPFANVLNLNLGSRYSNYDAWGNTTNSKVA CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEE IEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVVDNTGDFEDPCTGFTGAPNPACANV EEEEHHHHHHHHCCCCHHEECCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PNDGSYTNTAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDRVRGLSLNVDSWRVVLD CCCCCCCCEEEEEEEECCCCCCCEEECCCCCCEEEEEEEECCHHCEEEEECCCHHHHHHH DMLTGVGLQQVVSDCFDGSEAAFCPLIQRDANGQLTRVSVPFAYNSGKVDIRGYDAGIHY HHHHCCCHHHHHHHHCCCCCCEECHHEEECCCCCEEEEEEEEEECCCEEEEEEECCCEEE TLADTAWGTFAMGLDATFFSSYRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHAS EEECCCCCEEECCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHEEECCCCCEECC WNTRYLGRTVNGSQYEDFCADTNADGSCAYFRIGSVVYHDASLSRKIASLHSTLAVGIDN CCCEEEEECCCCCCCHHHHCCCCCCCCEEEEEECEEEEECHHHHHHHHHHHHHHHHCCCC LGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCC >Mature Secondary Structure SSSRTAVVPKRGVLQTTRLVTAVSFALAVAAVPAAAQQRGDGADDATQTLDQVNVTGTH CCCCEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHCCCCHHH LRRVDAETASPVVVIDRQRIEDSGQNTLGQLLQRLPMMAGFQAGPALNSGFSHGRALVSL HEEECCCCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH RNLGPERTLVLVNGHRMAGPASSVASAPGVDVNAIPAAMVERVEVLTDGASSVYGSDAIG HHCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHCCCCHHHH GVVNVILKDRYDGFAATVDYAQSTHGDANRRTLGLEWGKTWDRGGLILGLSRNSMNPVFN HHHHHHHHHCCCCEEEEEHHHHCCCCCCCCEEEEECCCCCCCCCCEEEEECCCCCCCHHC RDRSYAAKAVEYLDGQVSEIRGGNTRAFLTDGRRVTPVDGVRPGPVGQDAFRPYQPATDS CCHHHHHHHHHHHCCHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCHHHCCCCCCCCCC YNVYDAQYLITPIKRTNASLHGSFDFTPGVQGYMDVFWTRSKTISRLDAYAMEMQDAVDN CCEEECEEEEEEHHHCCCCEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHH YYNPFGDALDRYLLRSTQANTRVYTSTMFQTNVVAGLRGRVDGSSWQWDAAAGYARYKDT HCCHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHH LVRTGFSITSALNNAVGASFLDSDGVVKCGAPGAVIAGCTPINIFNPNDPATIAALRDTQ HHHCCCHHHHHHHHHHCCCEECCCCEEEECCCCCEEECCEEEEEECCCCCEEEEEECCCC RPVDLIDESQMRFVDISANGDLFKLPAGMVQAAVGLVYRTNKFAQGTTSDVAAADADGNC CCHHHHCCCCEEEEEEECCCCEEECCHHHHHHHHHHHEECCCCCCCCCCCCEECCCCCCC DYNDGCILKQGREESVREAYAELLVPLLRDAPFANVLNLNLGSRYSNYDAWGNTTNSKVA CCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEE IEWRPIANLLVRATGSQVFRAPALGDLYGSPYNSVVDNTGDFEDPCTGFTGAPNPACANV EEEEHHHHHHHHCCCCHHEECCCCHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PNDGSYTNTAQFNVVTSGANNVGFKLKPERGRSYNVGLVYDPDRVRGLSLNVDSWRVVLD CCCCCCCCEEEEEEEECCCCCCCEEECCCCCCEEEEEEEECCHHCEEEEECCCHHHHHHH DMLTGVGLQQVVSDCFDGSEAAFCPLIQRDANGQLTRVSVPFAYNSGKVDIRGYDAGIHY HHHHCCCHHHHHHHHCCCCCCEECHHEEECCCCCEEEEEEEEEECCCEEEEEEECCCEEE TLADTAWGTFAMGLDATFFSSYRFAGDPHNYVGENSSWGNMPRWRAVANLAWDNGPWHAS EEECCCCCEEECCCCHHHHHCCCCCCCCHHHCCCCCCCCCCCHHHHHHEEECCCCCEECC WNTRYLGRTVNGSQYEDFCADTNADGSCAYFRIGSVVYHDASLSRKIASLHSTLAVGIDN CCCEEEEECCCCCCCHHHHCCCCCCCCEEEEEECEEEEECHHHHHHHHHHHHHHHHCCCC LGDRKPPRFYSYSNAANTEASTYDTLGRYVWSRLRVEF CCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA