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The map label for this gene is secD [H]

Identifier: 21243244

GI number: 21243244

Start: 2939722

End: 2941566

Strand: Reverse

Name: secD [H]

Synonym: XAC2511

Alternate gene names: 21243244

Gene position: 2941566-2939722 (Counterclockwise)

Preceding gene: 21243245

Following gene: 21243243

Centisome position: 56.84

GC content: 62.66

Gene sequence:

>1845_bases
ATGCTCGAATTTCCTCGCTGGAAGTACTTCCTGATCCTGCTGGTACTGGCCGTCAGTGCGCTGTATGCGCTGCCCAACGT
GTACCAGAAGGACCCGTCCGTGCAGATCACCGCCAGCCGCGGTGCGCAGCTCGACGACGCACTGCGCAGCCGCATCGACG
GTGAGCTCAAGAGCGCCGGCATCACCCCGAAGGCGATCACGAAAGAAGGCGACAGCCTGATGGTGCGGTTGCCTTCGCTG
CAGGCGCAGACACGCGCCAACGACGTGTTGCGTCAGCAGCTGGGCGAGAACTACACCGTGGCGCTGAACCTGGCCTCCAC
CGTGCCGGACTGGCTGGCCAAGCTGGGCGGCCGACCGATGGTGCTGGGTCTGGACCTGGTGGGCGGTGTGCACTTCGCCA
TGCAGGTCGATCAGAAGGCCGCGCTGGAAAAGCGCCTGGACGGGTTTGCCGAAGACATCCGCACCACCTTGCGCGATGCG
CGTATCCCGTACCGCTCGGTGGAGCGTCGCGCCGACAACAGTATCCAGGTCAACCTGGGCGAGGGCGCCAGTGCCGACGC
CGCGCGCGTGGCGCTGGCCAAGGCGCAGCCGACCCTGACCTACGACGTCAGCGGCCAGAACATCGCCGTGAAGGTGCCGG
AGGCCGAACTCAAGCAGATCGCCAGCGGTGCGATCGAGCAGAACCTCACCACCTTGCGCAACCGCGTCAACGCACTGGGC
GTGTCCGAGCCGACCATCCAGCGCCAGGGCGAGGACCGCATCGTGGTCGAACTTCCCGGTCTGCAGGACACCGCCGAAGC
CAAGCGCCTGATCGGTGCCACCGCCTCGCTGGAATTCCGCGCCGTGGTCGACGGCAACGCCGACGATGCCGTGCGTAGCG
GCAACATTCCGCCGGAGGCCAAGGTCTATCGCCTGCGCGACAGCAACGCTCCGGTGTTGTTGAACAAACGCGCGCTGGTG
ACTGGCGACCAGATGGTCGATGCCACGGTGGGTAATGACGAAAACGGAATGCCGGCAGTGAATGTGACGCTCAATAATGC
TGCAGGCCAGCGTATGTTTGACTATACGAGTGCGAACGTCGGCAAGCTGATGTCCGTGGTCTTCATTGAGCGAGTTCCAA
CTGTGACCGTAGTTGACGGCAAGGAAATTCGAAGTGTACGAGTTAAGGAAGAAGCACTGCCTTCGACGCGTATCGCGGGT
GTATTTGGCAAGAATTTCCGTACCACCGGCCTGGAAAAGAAAGAAGCCGAAAATCTGGCCAAGCTGCTGAAATCCGGTTC
GTTGGCCGCGCCGATGGACTTCGTCGAGGAATACGTGATCGGTCCGAGCCTGGGTGCGGAGAACGTGGAGCGTGGCGTCA
CGGCGGTGGTCTACTCGTTCCTGTTCACCCTGGTGTTTTTCACCATCTACTACCGCGTGTTCGGCGCGATCACCTCGGTG
GCGCTGCTGTTCAACCTGCTGATCGTGGTGGCGGTGATGTCGCTGTTCGGCGCCACCATGACGCTGCCGGGTTTCGCTGG
CCTTGCGCTGTCGGTGGGTCTGTCGGTGGACGCCAACGTGCTGATCAACGAGCGTATCCGTGAAGAGTTGCGGCTCGGCG
TGCCGGCCAAATCGGCGATCGCGGCCGGTTACGAAAAGGCCGGCGGCACCATCCTCGATGCGAACCTGACCGGCCTGATC
GTGGCGGTGGCCTTGTACGCGTTCGGTACCGGCCCGCTGAAGGGTTTCGCGCTGACCATGATGATCGGTATTTTCGCCTC
GATGTTCACCGCGATCACGGTCTCGCGTGCGCTGGCGGTGCTGATCTACGGCAGCCGCAAGAAGCTGAAGTCTGTCGCTA
TTTAA

Upstream 100 bases:

>100_bases
CGTATCCATCTGAAGACCATTGGCGACGTTGTACCGGTCGCTTGAAGTCGTTCTCACTGCTAGGCGCGGCGCCGGGATGG
TGCCACGCGGGACTGTCGCA

Downstream 100 bases:

>100_bases
TGCGAGTCCCTCGCAAGAGCCCGTCTGTAATGCGAGTCCCTCGCAAGAGCCCGCACATCCATGTGCGGACTTTTTAGGAA
GATCTTTCGATGAAAATTTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 614; Mature: 614

Protein sequence:

>614_residues
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAGITPKAITKEGDSLMVRLPSL
QAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDA
RIPYRSVERRADNSIQVNLGEGASADAARVALAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALV
TGDQMVDATVGNDENGMPAVNVTLNNAAGQRMFDYTSANVGKLMSVVFIERVPTVTVVDGKEIRSVRVKEEALPSTRIAG
VFGKNFRTTGLEKKEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLI
VAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI

Sequences:

>Translated_614_residues
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAGITPKAITKEGDSLMVRLPSL
QAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDA
RIPYRSVERRADNSIQVNLGEGASADAARVALAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALV
TGDQMVDATVGNDENGMPAVNVTLNNAAGQRMFDYTSANVGKLMSVVFIERVPTVTVVDGKEIRSVRVKEEALPSTRIAG
VFGKNFRTTGLEKKEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLI
VAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI
>Mature_614_residues
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAGITPKAITKEGDSLMVRLPSL
QAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDA
RIPYRSVERRADNSIQVNLGEGASADAARVALAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALV
TGDQMVDATVGNDENGMPAVNVTLNNAAGQRMFDYTSANVGKLMSVVFIERVPTVTVVDGKEIRSVRVKEEALPSTRIAG
VFGKNFRTTGLEKKEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLI
VAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLKSVAI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=619, Percent_Identity=42.81098546042, Blast_Score=488, Evalue=1e-139,
Organism=Escherichia coli, GI1786610, Length=175, Percent_Identity=29.7142857142857, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 65890; Mature: 65890

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00107 PROTEIN_KINASE_ATP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAG
CCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHCC
ITPKAITKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPM
CCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCCE
VLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQVNLG
EEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEC
EGASADAARVALAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
CCCCCCHHHHHHCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEA
CCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCCCCC
KVYRLRDSNAPVLLNKRALVTGDQMVDATVGNDENGMPAVNVTLNNAAGQRMFDYTSANV
EEEEEECCCCCEEEECCEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHCCCCCH
GKLMSVVFIERVPTVTVVDGKEIRSVRVKEEALPSTRIAGVFGKNFRTTGLEKKEAENLA
HHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
KLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
HHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAI
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
AAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAV
HHCHHHCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIYGSRKKLKSVAI
EEECCHHHHHHCCC
>Mature Secondary Structure
MLEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQITASRGAQLDDALRSRIDGELKSAG
CCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHCC
ITPKAITKEGDSLMVRLPSLQAQTRANDVLRQQLGENYTVALNLASTVPDWLAKLGGRPM
CCCHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHCCCCE
VLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQVNLG
EEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEC
EGASADAARVALAKAQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTLRNRVNALG
CCCCCCHHHHHHCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVRSGNIPPEA
CCCCHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCCCCC
KVYRLRDSNAPVLLNKRALVTGDQMVDATVGNDENGMPAVNVTLNNAAGQRMFDYTSANV
EEEEEECCCCCEEEECCEEECCCCEEEEECCCCCCCCCEEEEEECCCCCCHHHHCCCCCH
GKLMSVVFIERVPTVTVVDGKEIRSVRVKEEALPSTRIAGVFGKNFRTTGLEKKEAENLA
HHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHHHH
KLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRVFGAITSV
HHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPAKSAI
HHHHHHHHHHHHHHHHCCHHCCCCHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCHHHH
AAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRALAV
HHCHHHCCCEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIYGSRKKLKSVAI
EEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]