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The map label for this gene is ybeY [C]

Identifier: 21243197

GI number: 21243197

Start: 2868982

End: 2869467

Strand: Direct

Name: ybeY [C]

Synonym: XAC2464

Alternate gene names: 21243197

Gene position: 2868982-2869467 (Clockwise)

Preceding gene: 77748656

Following gene: 21243198

Centisome position: 55.43

GC content: 65.84

Gene sequence:

>486_bases
ATGACCAAAGGCCCTGTCCGCCTCGACGTTGCCGTCAGCTATGCGCTGCCGCGCGCCGGCCTGCCGTCGGCGGTGAGTTT
TCGCAAGTGGGTGGCCGCAGCGTTGAAGGGGCGCATCCGCGAGGCCGATCTGGCAGTGCGCGTGGTCGACGAGAAGGAAG
GCTGCTCGCTCAATCACCACTACCGCGGCAAGGATTACGCCACCAACGTGCTGAGCTTCCCCGCCGAACTGCCGGAAGGC
CTGCCCAAGGGCATCAAGATGCCGCTGCTGGGCGATCTGGTGATCTGCGCGCCGGTGGTGGCGCGCGAGGCCGCCGAGCA
AGGCAAATCGCTGGCTGCGCACTACGCGCACCTGACCGTGCATGGCACCTTGCACTTGCTTGGCTGGGATCACGAAGACG
ACAAGGAGGCCGAGGCGATGGAGCAACTGGAGCGCGAGATCCTGGCCGACCTCGGCATCGACGACCCTTACGCAGGAGAA
CACTGA

Upstream 100 bases:

>100_bases
GGTGATCGAAATCGCCTACGATCCCAGCGAGTGGAAGTCGCAGTGAGGCAACACACGCGCGATACTGTGGCTCCTGTCTG
AGCTCAATGCTGGTATCGCC

Downstream 100 bases:

>100_bases
TGCGTTTTTGCATTGCCGGCGCCCTGCTGCTGTTGAGCGCGCCCGGCGCCTGGGCACAGACCGCGCCGGTGCGCCCGGAC
CTTGCCGCCTTGATCGAATG

Product: metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MTKGPVRLDVAVSYALPRAGLPSAVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEG
LPKGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEAEAMEQLEREILADLGIDDPYAGE
H

Sequences:

>Translated_161_residues
MTKGPVRLDVAVSYALPRAGLPSAVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEG
LPKGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEAEAMEQLEREILADLGIDDPYAGE
H
>Mature_160_residues
TKGPVRLDVAVSYALPRAGLPSAVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHHYRGKDYATNVLSFPAELPEGL
PKGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTVHGTLHLLGWDHEDDKEAEAMEQLEREILADLGIDDPYAGEH

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=143, Percent_Identity=54.5454545454545, Blast_Score=142, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_XANAC (Q8PJR6)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_642779.1
- ProteinModelPortal:   Q8PJR6
- SMR:   Q8PJR6
- GeneID:   1156535
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC2464
- NMPDR:   fig|190486.1.peg.2423
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   PRK00016
- BioCyc:   XAXO190486:XAC2464-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17539; Mature: 17408

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKGPVRLDVAVSYALPRAGLPSAVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHH
CCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
YRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTV
CCCCHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
HGTLHLLGWDHEDDKEAEAMEQLEREILADLGIDDPYAGEH
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TKGPVRLDVAVSYALPRAGLPSAVSFRKWVAAALKGRIREADLAVRVVDEKEGCSLNHH
CCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCC
YRGKDYATNVLSFPAELPEGLPKGIKMPLLGDLVICAPVVAREAAEQGKSLAAHYAHLTV
CCCCHHHHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE
HGTLHLLGWDHEDDKEAEAMEQLEREILADLGIDDPYAGEH
EEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217