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The map label for this gene is yagA [C]

Identifier: 21243157

GI number: 21243157

Start: 2826253

End: 2827080

Strand: Reverse

Name: yagA [C]

Synonym: XAC2424

Alternate gene names: 21243157

Gene position: 2827080-2826253 (Counterclockwise)

Preceding gene: 21243158

Following gene: 21243156

Centisome position: 54.62

GC content: 60.63

Gene sequence:

>828_bases
ATGGTGAGGCCATCTCAACGCCGGGAGATGGCCCGATGGGCGGTGGCGAACAAGGCGATGAGCATCCGGCACGCCTGCCA
GGCGTTTGAGGTCAGCCAGACCTGCTACCGCTATCAAGCCAAGGCCAGCGAGGAGAACGTCCAGATTGCCGATTGGCTTG
TCCGGTTGACCACGACCTATCGTGATTGGGGGTTCGGCCTATGCTTTTTGCACCTGCGTAACGTGAAGGGCTTCGGCTGG
AACCACAAGCGGGTGTACCGCATCTACCGGGAGCTGGAGTTGAACCTGCGGATCAAGCCAAAGAAACGACTGGTACGTGA
GCGGCCAGAGCCGTTGTCGGTACCGGAGGCGATCAACCAGGTCTGGTCGATGGATTTCATGCACGACCAGTTGGCCGATG
GTCGCAGCTTCCGGTTATTTAACGTGCTCGACGACTTCAATCGCGAGGGTCTGGGCATCGAGGTCGACCTGTCGCTGCCA
TCGGCCCGGGTGATCCGCTCGTTGGATCAGATCATCGACTGGCGCGGCAAGCCAAACGCCATTCGCTGCGACAACGGCCC
GGAGTACATCAGCGGCGCGCTGCTAGCTTGGGCACAGCAGCGCGGCATTCGGATCGAGCACATCCAGCCGGGCAAACCGC
AGCAAAATGCCTACGTCGAACGTTACAACCGCACCGTCCGCTACGCCTGGCTGGCCACAACATTGTTCGACACCATCGAG
CAGGTTCAGGACAAGGCCACGCGCTGGCTATGGACGTACAACCATGAGCGCCCCAACATGGCGCTCGGCGGTATCACCCC
AGCAATGAAATTGGCGATGGCCGCGTAG

Upstream 100 bases:

>100_bases
CCCAGCTCAAGGAGCTGCAGGACGAGAACCGGCGCCTGAAGAAGATGTACGCCGAATCGCAAATGACTGCCGAAGTACTT
CGTGAGGCGATGGCAAAAAA

Downstream 100 bases:

>100_bases
CTCCACTTTTGGCGAACGCTAAAAGCGGGGGGATTACCCGATGAAGCGGTGTGCGAACGTTGGCTGGAAAATCCGTACTG
GCAGTTTTTCACCGGCGAGG

Product: ISxcd1 transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MVRPSQRREMARWAVANKAMSIRHACQAFEVSQTCYRYQAKASEENVQIADWLVRLTTTYRDWGFGLCFLHLRNVKGFGW
NHKRVYRIYRELELNLRIKPKKRLVRERPEPLSVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLP
SARVIRSLDQIIDWRGKPNAIRCDNGPEYISGALLAWAQQRGIRIEHIQPGKPQQNAYVERYNRTVRYAWLATTLFDTIE
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA

Sequences:

>Translated_275_residues
MVRPSQRREMARWAVANKAMSIRHACQAFEVSQTCYRYQAKASEENVQIADWLVRLTTTYRDWGFGLCFLHLRNVKGFGW
NHKRVYRIYRELELNLRIKPKKRLVRERPEPLSVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLP
SARVIRSLDQIIDWRGKPNAIRCDNGPEYISGALLAWAQQRGIRIEHIQPGKPQQNAYVERYNRTVRYAWLATTLFDTIE
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
>Mature_275_residues
MVRPSQRREMARWAVANKAMSIRHACQAFEVSQTCYRYQAKASEENVQIADWLVRLTTTYRDWGFGLCFLHLRNVKGFGW
NHKRVYRIYRELELNLRIKPKKRLVRERPEPLSVPEAINQVWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLP
SARVIRSLDQIIDWRGKPNAIRCDNGPEYISGALLAWAQQRGIRIEHIQPGKPQQNAYVERYNRTVRYAWLATTLFDTIE
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=166, Percent_Identity=29.5180722891566, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32222; Mature: 32222

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRPSQRREMARWAVANKAMSIRHACQAFEVSQTCYRYQAKASEENVQIADWLVRLTTTY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RDWGFGLCFLHLRNVKGFGWNHKRVYRIYRELELNLRIKPKKRLVRERPEPLSVPEAINQ
HHHCHHHHEEEHHCCCCCCCCHHHHHHHHHHHHCCEEECCHHHHHHCCCCCCCHHHHHHH
VWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLDQIIDWRGKPNA
HHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCE
IRCDNGPEYISGALLAWAQQRGIRIEHIQPGKPQQNAYVERYNRTVRYAWLATTLFDTIE
EECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
HHHHHHHHEEEEECCCCCCEEECCCCHHHHHHHCC
>Mature Secondary Structure
MVRPSQRREMARWAVANKAMSIRHACQAFEVSQTCYRYQAKASEENVQIADWLVRLTTTY
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
RDWGFGLCFLHLRNVKGFGWNHKRVYRIYRELELNLRIKPKKRLVRERPEPLSVPEAINQ
HHHCHHHHEEEHHCCCCCCCCHHHHHHHHHHHHCCEEECCHHHHHHCCCCCCCHHHHHHH
VWSMDFMHDQLADGRSFRLFNVLDDFNREGLGIEVDLSLPSARVIRSLDQIIDWRGKPNA
HHHHHHHHHHHCCCCCEEEEHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCE
IRCDNGPEYISGALLAWAQQRGIRIEHIQPGKPQQNAYVERYNRTVRYAWLATTLFDTIE
EECCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
QVQDKATRWLWTYNHERPNMALGGITPAMKLAMAA
HHHHHHHHEEEEECCCCCCEEECCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]