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The map label for this gene is lig3 [H]

Identifier: 21243148

GI number: 21243148

Start: 2814778

End: 2817396

Strand: Reverse

Name: lig3 [H]

Synonym: XAC2414

Alternate gene names: 21243148

Gene position: 2817396-2814778 (Counterclockwise)

Preceding gene: 21243149

Following gene: 77748654

Centisome position: 54.44

GC content: 65.41

Gene sequence:

>2619_bases
ATGAGCCTGAGCGAATACCGCCGCAAGCGCAGCTTCGACAAGACCCGCGAGCCGGAGCCGGGCAAGACCCTGCCGCCGGG
GCAGCGTGCGATCTTCGTGGTGCAGTTGCACCACGCCAGCCGCCGCCACTACGATTTTCGCCTGCAGGTGGGCGATGCGC
TCAAGAGCTGGGCGGTGCCGAAGGGGCCAAGTTACGACCCCAAGGTCAAGCGCATGGCAGTGGAGGTGGAAGACCACCCG
GTCGATTACGCCAGCTTCGAGGGCGAGATTCCCAGGGGCGAATACGGCGGCGGGCACGTGGCGCAGTTCGATCATGGCGT
GTGGGCCACCGCAGGCGACCCCGAAGCGCAGTTGGCCAAGGGGCATCTGCGCTTCGAGTTGTTCGGCAACAAGCTCAAGG
GCGGCTGGCATCTGGTGCGCTCGGGCAAGCCGGCGCGGCAGCCGCAGTGGCTGCTGTTCAAAGAGGACGATGCCTACGCT
GGCACGCTGGAGGCCGACGACCTACTGGCCGACGTCGCTGCCACACCTGCCGACGATGTACGCCGCGCGGGCGCCGGCAA
GACCCAGCGCAAGGGGCTGACGACCGTACCGCCGCCAGCGGCGAAAAAACGTGGCACCTGGGCGAAACAGGCGCTGGCGC
TGAGCGGCGCACGTCGCGCCGAGATGGAAGATGCCCCGTTTGCGCCGCAGCTGGCCAAGCTGGTGCAGTCCCCGCCCGAA
GGCGCGCAGTGGCTGCATGAAATCAAATGGGACGGTTATCGCATCCTGGCCACGGTGACCAATGGCAAGGTGCGGCTGTG
GTCGCGCAATGCATTGGAGTGGACCGACAAGACACCGGAAATTGCCGATGCCATCCAGTCGCTGGGCCTGCGCAATGCGC
AGATCGATGGCGAATTGATCGCCGGACGCGGCACCAAGGAAGACTTCAACCTGCTGCAGGCCACCTTGTCCGGCGAACGC
CAGGTGCCGCTGGCGCTGGCGGTATTCGACCTGCTGCATGTGGACGGGGTGGACATTAGTGAGGCACCGTTGCGCGAGCG
CAAGCAGCTGTTGCAGCAGGTGCTGCAGGCTGCACCCCACATGCATCTGGCCTATAGCTCGCATGTCGAGGGCGACGGCA
CCGAGGCGTTCCGGGTGGCCGGCGAACAGCACTTCGAAGGCATCATTTCCAAACGCGCAGATCGCCCGTATCGCGATGGG
CGCAGCGACGATTGGCGCAAGACCAAGCAACTGGCCAGCCAGGAATATGCGGTGGTCGGCTACACCGCGCCCAAGGGCAG
CCGCAGTGGTTTTGGCTCGCTGTTGCTGGCCACGCCGGACCCGGTGCACGGCTGGTTATACGTGGGCCGTGTGGGCTCAG
GTTTCTCCGATGCCTTGATGCGCGAGGTCACCCAGCAACTGGAAGGCGGTGGGCGCAAACCCACCGCGCATATTCCCACC
CCAGACACCGACCTGCGCGGCGCCACCTGGTTTGCGCCGCGCTTTGTGGTGGAGGTGTTCTATCGCGGCATCGGTGGGCA
ACAGTTATTGCGCCAGGCATCGTTCAAGGCGCTGCGTCCGGATAAACGCATTGCCGATCTGGCCGACAGCGATGCCGGAA
ATGGCCGGTCTACTTCGTCGTCTACCCAGCGTTCGGCAAAAACACGTGCTGCCAAAAACGCGGCAACCCAGGTAGCGAAA
CGTGCAGCGACGCGGGCAACAGCGCCTGCGCGCAAATCTGCGGTTGCCACACCTTCCTCGGCTGCGCTGCCGACGCTGTC
CAGCCCGACCAAGCTGATCTACCCGGATATCCGCGCGACCAAGGGCGATGTCTGGGACTACTACCAGGCGGTGATGGATC
ACCTGTTGCCGCAGATCGTGGGACGCCCGCTGTCCATCATTCGCTGCCCCAGCGGCGCCGAAAAACCGTGTTTCTTCCAG
AAGCACCACACCGCCGGCCTCGAGCGTGTGAGCTCGGTCAAACTGACCGAAGAGACCGGCACCAATGCGTATTACCTGGT
GATCGAAGACGCACCCGGCCTGCTGGAGCTGGTGCAATTCAATGCGCTGGAATTCCATCCCTGGGGCTCGCATGCCGACC
GCCCGGATGTGGCCGACCGGGTGGTCTTCGATCTCGACCCGGGCCCGGACGTGCCGTTCGCCGAGGTCAAACGTGCGGCC
AACGATATTCGTAAGCTGCTGGCGCAATTGGAGCTGGAGTCGTTCCTGCGTGTGTCTGGCGGCAAGGGGCTGCACGTGGT
GGTGCCCCTGAATCCCGGCTGCGACTGGGAGGTGACCAAGCGTTTCGCCAAGGGATTCGCCGATGCCCTGGCGCAGGCCG
AGCCGCAGCGGTTCATCGCCACTGCCACCAAGCGGCTGCGCAACAAGCGCATCTTCGTGGACTACCTGCGCAACGGCCGT
GGCGCCACGGCGGTCGCGTCCTATCCGTTACGCGGCCGCCCGGGGGCGCCAGTCGCGCTGCCGCTGGCGTGGTCGGACCT
GTCCAAGCTGCAGCGCGCCGATGCATTCACCTTGCGCGATGTGCCGGAAAAGCTGCGCCGTCGGCGCAAGGACCCCTGGG
CAGACATGGACCGCATTCGGCAGAACCTGGCGCGCTGGGCGGAGCAGGACGAGGACTGA

Upstream 100 bases:

>100_bases
TGGCGTCGGTGCCGATGAACTGAAAGCGGCCGTGCAGAAGGTGGGGCCATTGGCCGTCAGCGTACGCCAGCACCTGGGCA
AATAAGCGGGAAGGTCTGCC

Downstream 100 bases:

>100_bases
TGCGGTGCGATGGCAAGAATGCCGGCATCATCGCTGCGCAAGCGTGGTCGATCGTCGAAATTCCCGCGCGACGCAGGCGC
TTCGCATTGTCCTGACCCAT

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 872; Mature: 871

Protein sequence:

>872_residues
MSLSEYRRKRSFDKTREPEPGKTLPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVPKGPSYDPKVKRMAVEVEDHP
VDYASFEGEIPRGEYGGGHVAQFDHGVWATAGDPEAQLAKGHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYA
GTLEADDLLADVAATPADDVRRAGAGKTQRKGLTTVPPPAAKKRGTWAKQALALSGARRAEMEDAPFAPQLAKLVQSPPE
GAQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIQSLGLRNAQIDGELIAGRGTKEDFNLLQATLSGER
QVPLALAVFDLLHVDGVDISEAPLRERKQLLQQVLQAAPHMHLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDG
RSDDWRKTKQLASQEYAVVGYTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTQQLEGGGRKPTAHIPT
PDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGRSTSSSTQRSAKTRAAKNAATQVAK
RAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRATKGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQ
KHHTAGLERVSSVKLTEETGTNAYYLVIEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIATATKRLRNKRIFVDYLRNGR
GATAVASYPLRGRPGAPVALPLAWSDLSKLQRADAFTLRDVPEKLRRRRKDPWADMDRIRQNLARWAEQDED

Sequences:

>Translated_872_residues
MSLSEYRRKRSFDKTREPEPGKTLPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVPKGPSYDPKVKRMAVEVEDHP
VDYASFEGEIPRGEYGGGHVAQFDHGVWATAGDPEAQLAKGHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYA
GTLEADDLLADVAATPADDVRRAGAGKTQRKGLTTVPPPAAKKRGTWAKQALALSGARRAEMEDAPFAPQLAKLVQSPPE
GAQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIQSLGLRNAQIDGELIAGRGTKEDFNLLQATLSGER
QVPLALAVFDLLHVDGVDISEAPLRERKQLLQQVLQAAPHMHLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDG
RSDDWRKTKQLASQEYAVVGYTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTQQLEGGGRKPTAHIPT
PDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGRSTSSSTQRSAKTRAAKNAATQVAK
RAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRATKGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQ
KHHTAGLERVSSVKLTEETGTNAYYLVIEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIATATKRLRNKRIFVDYLRNGR
GATAVASYPLRGRPGAPVALPLAWSDLSKLQRADAFTLRDVPEKLRRRRKDPWADMDRIRQNLARWAEQDED
>Mature_871_residues
SLSEYRRKRSFDKTREPEPGKTLPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVPKGPSYDPKVKRMAVEVEDHPV
DYASFEGEIPRGEYGGGHVAQFDHGVWATAGDPEAQLAKGHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYAG
TLEADDLLADVAATPADDVRRAGAGKTQRKGLTTVPPPAAKKRGTWAKQALALSGARRAEMEDAPFAPQLAKLVQSPPEG
AQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIQSLGLRNAQIDGELIAGRGTKEDFNLLQATLSGERQ
VPLALAVFDLLHVDGVDISEAPLRERKQLLQQVLQAAPHMHLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDGR
SDDWRKTKQLASQEYAVVGYTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTQQLEGGGRKPTAHIPTP
DTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGRSTSSSTQRSAKTRAAKNAATQVAKR
AATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRATKGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQK
HHTAGLERVSSVKLTEETGTNAYYLVIEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAAN
DIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIATATKRLRNKRIFVDYLRNGRG
ATAVASYPLRGRPGAPVALPLAWSDLSKLQRADAFTLRDVPEKLRRRRKDPWADMDRIRQNLARWAEQDED

Specific function: Probably involved in the repair of DNA double-strand breaks by non-homologous-end joining (NHEJ) during spore germination [H]

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR014145
- InterPro:   IPR014143 [H]

Pfam domain/function: PF01068 DNA_ligase_A_M [H]

EC number: =6.5.1.1 [H]

Molecular weight: Translated: 96307; Mature: 96176

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSEYRRKRSFDKTREPEPGKTLPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
CCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEHHHHHHCCCC
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPRGEYGGGHVAQFDHGVWATAGDPEAQLAK
CCCCCCCHHEEEEEEECCCCCCHHHCCCCCCCCCCCCCEEEEECCCEEECCCCCHHHHHC
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYAGTLEADDLLADVAATPADDV
CCEEEEEECCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHH
RRAGAGKTQRKGLTTVPPPAAKKRGTWAKQALALSGARRAEMEDAPFAPQLAKLVQSPPE
HHCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCHHHHHHHCCCCH
GAQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIQSLGLRNAQIDGELI
HHHHHHHHCCCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEE
AGRGTKEDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKQLLQQVLQAAPH
ECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
MHLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEE
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTQQLEGGGRKPTAHIPT
EECCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGRSTSS
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCH
STQRSAKTRAAKNAATQVAKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCCCC
KGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHEEEECCCC
TNAYYLVIEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
CCEEEEEEECCCCHHHHHHHCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIA
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
TATKRLRNKRIFVDYLRNGRGATAVASYPLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
HHHHHHHCCCEEEHHHHCCCCCEEEECCCCCCCCCCCEEEEECHHHHHHHHHHCCHHHHH
VPEKLRRRRKDPWADMDRIRQNLARWAEQDED
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLSEYRRKRSFDKTREPEPGKTLPPGQRAIFVVQLHHASRRHYDFRLQVGDALKSWAVP
CHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEEHHHHHHCCCC
KGPSYDPKVKRMAVEVEDHPVDYASFEGEIPRGEYGGGHVAQFDHGVWATAGDPEAQLAK
CCCCCCCHHEEEEEEECCCCCCHHHCCCCCCCCCCCCCEEEEECCCEEECCCCCHHHHHC
GHLRFELFGNKLKGGWHLVRSGKPARQPQWLLFKEDDAYAGTLEADDLLADVAATPADDV
CCEEEEEECCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHH
RRAGAGKTQRKGLTTVPPPAAKKRGTWAKQALALSGARRAEMEDAPFAPQLAKLVQSPPE
HHCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCHHCCCCCCCCCHHHHHHHCCCCH
GAQWLHEIKWDGYRILATVTNGKVRLWSRNALEWTDKTPEIADAIQSLGLRNAQIDGELI
HHHHHHHHCCCCEEEEEEEECCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEE
AGRGTKEDFNLLQATLSGERQVPLALAVFDLLHVDGVDISEAPLRERKQLLQQVLQAAPH
ECCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
MHLAYSSHVEGDGTEAFRVAGEQHFEGIISKRADRPYRDGRSDDWRKTKQLASQEYAVVG
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEE
YTAPKGSRSGFGSLLLATPDPVHGWLYVGRVGSGFSDALMREVTQQLEGGGRKPTAHIPT
EECCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
PDTDLRGATWFAPRFVVEVFYRGIGGQQLLRQASFKALRPDKRIADLADSDAGNGRSTSS
CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCH
STQRSAKTRAAKNAATQVAKRAATRATAPARKSAVATPSSAALPTLSSPTKLIYPDIRAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCEEEECCCCCC
KGDVWDYYQAVMDHLLPQIVGRPLSIIRCPSGAEKPCFFQKHHTAGLERVSSVKLTEETG
CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEHHHHHHHHHHHHHEEEECCCC
TNAYYLVIEDAPGLLELVQFNALEFHPWGSHADRPDVADRVVFDLDPGPDVPFAEVKRAA
CCEEEEEEECCCCHHHHHHHCCEEECCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHH
NDIRKLLAQLELESFLRVSGGKGLHVVVPLNPGCDWEVTKRFAKGFADALAQAEPQRFIA
HHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHH
TATKRLRNKRIFVDYLRNGRGATAVASYPLRGRPGAPVALPLAWSDLSKLQRADAFTLRD
HHHHHHHCCCEEEHHHHCCCCCEEEECCCCCCCCCCCEEEEECHHHHHHHHHHCCHHHHH
VPEKLRRRRKDPWADMDRIRQNLARWAEQDED
HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]