Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 21243116

GI number: 21243116

Start: 2775597

End: 2777714

Strand: Reverse

Name: yciR [C]

Synonym: XAC2382

Alternate gene names: 21243116

Gene position: 2777714-2775597 (Counterclockwise)

Preceding gene: 21243117

Following gene: 21243114

Centisome position: 53.67

GC content: 65.96

Gene sequence:

>2118_bases
ATGACTCAGGTGCGCTTCGGCTTGCAGGCACGCTTTCTCTTGGTGATGGCGCTGACGCTGCTGCTGGTCGGTGCGATTCT
GGCTTCGCTGCTGCAGCGACAAAGCGCGATGCAGCGCGAAGTGCGCGGCTTGAGTGCGCAAATCCTGCACGAGCTGTTCG
ATCGTAGCCTGCGCACGCGCGGCGAAACGCTGGCGACCGAACTGGCTTCCGGATTGGCCAACCCCTTGTATTACTCGGAT
CTGGGCGCGGTGGGGGCGCTGGTGCGCAATGCTTCGCGCCAGCAGGTGGTGAGCTACGTACTGGTGTTCGACCGCCATGG
CCGGCTGGTGCATGACGGCACGCCGTCCCTGCAGCGTTACGGGCAGGCCATGACCGATCCGCTCGCCGCCAAGGCGCTGG
CGGCGCAGGCGATGGTGTTGCAGTCCTCGCCGGAGGTGCTGGATGTGACGGTGCCGATCAAGATCGGCGACCAGCGCATC
GGTGGGGTGCGCGTGGGCATGTCGCGCGAGCGGGTGCGCAAGATCGAATCCGGCGCCAATCTCACCCTGGTGCAGAACCT
CAACGCCATCGGCAAGCGCGATCTGGGCTGGTTGCTGGTCCTGCTGGCCGCGCTGGTCGGGCTGGGCGTGTTGCTGGCCA
TCTACGTGCAGCGCACGCTGGTGGCGCCGATTCGGTTGCTGGCGGCGGCGGCAAAGCAGATCGAACGGGGCGACTACGCG
GTGCAGCTGCCGCCGCATCCGCGCAACGACGAGATCGGCGAGCTGATTTCCGCGTTCGGGCGCATGAGCGAAAGCATCGC
CCGGCACGACCGCGAAGTGCGGCATATGGCCTACACCGACGCGTTGACAGGGCTGACCAACCGGCTAGGCTTTCGCGAGG
GTCTGGATCATCTGCTCCACACCGCGCGCAGCACCGACAGCAAGCTGGCCTTGCTGTTCGCCGATATCGACGACTTCAAA
CGCGTCAACGACACGCTTGGCCATGAGGCCGGCGACGAAGCCTTGCTGCAGTTCGCCAGCCGCATCAGCCGCGCAGTTGC
CGCGCTGGGCGGCGACGATGCGATTCTGGCGCGCTTCGGCGGGGATGAGTTCGTGATCCTGCTGCAAAGCGGCGATGTCA
GCCTGCTGGCGGCGCAACTGGCCGACCGGCTGGTGCACGAACTGAGCCGGCCGTTGAACGTGCAGGGCCGCGAAGTGTTC
CTGGGGACCTCGATCGGCATCACGCTATTCCCCGACGACGCGCGCGATGCCACCGCGCTGCTGAAGAATGGCGACATCGC
CATGTACCAGGCCAAGGTGGCCGGCAAGAACTGCCATCGCTTCTATAGCCGCGCCGCCGATCACGCGGTGGAGCGCCGCG
TGCACATGGAGCACGAATTGCGCGGGGCCTGGGAACGCGACGAGTTGCGTCTGGTCTACCAGCCGATCTACCGCACCAGC
GACCGGGTGCTGGTGGGGGTGGAGGTGCTGCTGCGCTGGCAGCATCCGGCGCTGGGAACGATTGCGCCGTCCACCTTTAT
CGATATTGCCGAGCAGAGCGGCCTGATCGAAGTGATCGGCCCCAAGGTACTGCGCGCGGCCTGCCTGGAGGCGGCGCAGT
GGCCAGTGGTGGGCGAGGGCCTGTTCGTGTCGGTCAACGTTTCGCCGCGGCAACTGCGCAGCGGTGCGCTGATCGACACC
GTGGCCGGGTGCCTGGCCGAGTCGGGGCTGCCTGCCGCTCGCCTGCATCTGGAGCTGACCGAGACCGCCGTGATCGGCGA
CGAGATGATGGCTGCCAGCCTGCTCGATCAACTCCATCGCACCGGCGTGAAGGTGTGGCTGGACGACTTCGGTACCGGCT
TCTCCGGCTTGAGCCATTTGCGTCAGGTGCCGGTGGACGGGGTCAAGATCGACAAGAGTTTCATTGCCGACCTGCAGCGC
GACCCGGACGATCTGGCGCTGACCACCGCGATCATCAACATGGCGCACTCGCTGGGAATCACCGTGGTTGCCGAAGGCAT
CGAGCAGGAAGCGCAGTTCAATCTGTTGCGCGAGCGCGGTTGCGACCTGGGGCAGGGCTATTGGTTCAGCAGGCCGTTGA
GCCCGACCGACATGGTCAAGCTGATCGCTGCAGGGTGA

Upstream 100 bases:

>100_bases
GCTTTTTCGATACCACCGGGTTCCGTCCGCTGGATCCCACTAGCCGCCGACGTCTGCAGGAGTTGAGCGCGGGCGTGCAA
CGCGTCAGGGATCACGTGGA

Downstream 100 bases:

>100_bases
GTGCCGTGGGAGCGCGCCTGAGCGCAACGGGCTTTCCTGGTAAAGCTTCATCGCGCCCGGGTGCGCTCCTACGAAGCGCG
TGTCTGGGTCGTTGCAGCGG

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MTQVRFGLQARFLLVMALTLLLVGAILASLLQRQSAMQREVRGLSAQILHELFDRSLRTRGETLATELASGLANPLYYSD
LGAVGALVRNASRQQVVSYVLVFDRHGRLVHDGTPSLQRYGQAMTDPLAAKALAAQAMVLQSSPEVLDVTVPIKIGDQRI
GGVRVGMSRERVRKIESGANLTLVQNLNAIGKRDLGWLLVLLAALVGLGVLLAIYVQRTLVAPIRLLAAAAKQIERGDYA
VQLPPHPRNDEIGELISAFGRMSESIARHDREVRHMAYTDALTGLTNRLGFREGLDHLLHTARSTDSKLALLFADIDDFK
RVNDTLGHEAGDEALLQFASRISRAVAALGGDDAILARFGGDEFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVF
LGTSIGITLFPDDARDATALLKNGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTS
DRVLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWPVVGEGLFVSVNVSPRQLRSGALIDT
VAGCLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHRTGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQR
DPDDLALTTAIINMAHSLGITVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPTDMVKLIAAG

Sequences:

>Translated_705_residues
MTQVRFGLQARFLLVMALTLLLVGAILASLLQRQSAMQREVRGLSAQILHELFDRSLRTRGETLATELASGLANPLYYSD
LGAVGALVRNASRQQVVSYVLVFDRHGRLVHDGTPSLQRYGQAMTDPLAAKALAAQAMVLQSSPEVLDVTVPIKIGDQRI
GGVRVGMSRERVRKIESGANLTLVQNLNAIGKRDLGWLLVLLAALVGLGVLLAIYVQRTLVAPIRLLAAAAKQIERGDYA
VQLPPHPRNDEIGELISAFGRMSESIARHDREVRHMAYTDALTGLTNRLGFREGLDHLLHTARSTDSKLALLFADIDDFK
RVNDTLGHEAGDEALLQFASRISRAVAALGGDDAILARFGGDEFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVF
LGTSIGITLFPDDARDATALLKNGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTS
DRVLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWPVVGEGLFVSVNVSPRQLRSGALIDT
VAGCLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHRTGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQR
DPDDLALTTAIINMAHSLGITVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPTDMVKLIAAG
>Mature_704_residues
TQVRFGLQARFLLVMALTLLLVGAILASLLQRQSAMQREVRGLSAQILHELFDRSLRTRGETLATELASGLANPLYYSDL
GAVGALVRNASRQQVVSYVLVFDRHGRLVHDGTPSLQRYGQAMTDPLAAKALAAQAMVLQSSPEVLDVTVPIKIGDQRIG
GVRVGMSRERVRKIESGANLTLVQNLNAIGKRDLGWLLVLLAALVGLGVLLAIYVQRTLVAPIRLLAAAAKQIERGDYAV
QLPPHPRNDEIGELISAFGRMSESIARHDREVRHMAYTDALTGLTNRLGFREGLDHLLHTARSTDSKLALLFADIDDFKR
VNDTLGHEAGDEALLQFASRISRAVAALGGDDAILARFGGDEFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVFL
GTSIGITLFPDDARDATALLKNGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTSD
RVLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWPVVGEGLFVSVNVSPRQLRSGALIDTV
AGCLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHRTGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRD
PDDLALTTAIINMAHSLGITVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPTDMVKLIAAG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=35.2803738317757, Blast_Score=260, Evalue=2e-70,
Organism=Escherichia coli, GI87081921, Length=446, Percent_Identity=34.0807174887892, Blast_Score=225, Evalue=8e-60,
Organism=Escherichia coli, GI226510982, Length=501, Percent_Identity=28.5429141716567, Blast_Score=178, Evalue=8e-46,
Organism=Escherichia coli, GI87081845, Length=260, Percent_Identity=33.4615384615385, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1788502, Length=247, Percent_Identity=34.412955465587, Blast_Score=139, Evalue=6e-34,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=32.9113924050633, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081980, Length=255, Percent_Identity=34.1176470588235, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1787055, Length=258, Percent_Identity=32.1705426356589, Blast_Score=134, Evalue=2e-32,
Organism=Escherichia coli, GI1786507, Length=261, Percent_Identity=31.0344827586207, Blast_Score=133, Evalue=4e-32,
Organism=Escherichia coli, GI87081743, Length=250, Percent_Identity=32, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1788381, Length=423, Percent_Identity=29.0780141843972, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1788849, Length=259, Percent_Identity=28.1853281853282, Blast_Score=92, Evalue=8e-20,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=32.6086956521739, Blast_Score=90, Evalue=5e-19,
Organism=Escherichia coli, GI87081977, Length=157, Percent_Identity=33.1210191082803, Blast_Score=89, Evalue=9e-19,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=26.8595041322314, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1788956, Length=159, Percent_Identity=37.1069182389937, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=30.8139534883721, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI145693134, Length=193, Percent_Identity=30.5699481865285, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=31.7919075144509, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=33.1395348837209, Blast_Score=67, Evalue=5e-12,
Organism=Escherichia coli, GI1789650, Length=511, Percent_Identity=22.1135029354207, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI87082280, Length=234, Percent_Identity=26.9230769230769, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=31.5151515151515, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 76831; Mature: 76699

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVRFGLQARFLLVMALTLLLVGAILASLLQRQSAMQREVRGLSAQILHELFDRSLRTR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC
GETLATELASGLANPLYYSDLGAVGALVRNASRQQVVSYVLVFDRHGRLVHDGTPSLQRY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCHHHHHH
GQAMTDPLAAKALAAQAMVLQSSPEVLDVTVPIKIGDQRIGGVRVGMSRERVRKIESGAN
HHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEECCCHHHHHHHHCCCC
LTLVQNLNAIGKRDLGWLLVLLAALVGLGVLLAIYVQRTLVAPIRLLAAAAKQIERGDYA
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
VQLPPHPRNDEIGELISAFGRMSESIARHDREVRHMAYTDALTGLTNRLGFREGLDHLLH
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TARSTDSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVAALGGDDAILARFG
HHCCCCCCEEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
GDEFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDARDATAL
CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEECCCCCCHHHHH
LKNGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTS
HCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
DRVLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWPVVGEG
CCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEHHCHHHHHHHHHHHHCCCEECCC
LFVSVNVSPRQLRSGALIDTVAGCLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR
EEEEEECCHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIINMAHSLGI
CCCEEEEHHCCCCHHHHHHHHHCCCCCEEECHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPTDMVKLIAAG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
TQVRFGLQARFLLVMALTLLLVGAILASLLQRQSAMQREVRGLSAQILHELFDRSLRTR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHC
GETLATELASGLANPLYYSDLGAVGALVRNASRQQVVSYVLVFDRHGRLVHDGTPSLQRY
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCEEECCCHHHHHH
GQAMTDPLAAKALAAQAMVLQSSPEVLDVTVPIKIGDQRIGGVRVGMSRERVRKIESGAN
HHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCEEECCCHHHHHHHHCCCC
LTLVQNLNAIGKRDLGWLLVLLAALVGLGVLLAIYVQRTLVAPIRLLAAAAKQIERGDYA
EEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
VQLPPHPRNDEIGELISAFGRMSESIARHDREVRHMAYTDALTGLTNRLGFREGLDHLLH
EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
TARSTDSKLALLFADIDDFKRVNDTLGHEAGDEALLQFASRISRAVAALGGDDAILARFG
HHCCCCCCEEEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
GDEFVILLQSGDVSLLAAQLADRLVHELSRPLNVQGREVFLGTSIGITLFPDDARDATAL
CCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEEEECCCCCCHHHHH
LKNGDIAMYQAKVAGKNCHRFYSRAADHAVERRVHMEHELRGAWERDELRLVYQPIYRTS
HCCCCEEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCC
DRVLVGVEVLLRWQHPALGTIAPSTFIDIAEQSGLIEVIGPKVLRAACLEAAQWPVVGEG
CCEEEEEHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEHHCHHHHHHHHHHHHCCCEECCC
LFVSVNVSPRQLRSGALIDTVAGCLAESGLPAARLHLELTETAVIGDEMMAASLLDQLHR
EEEEEECCHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
TGVKVWLDDFGTGFSGLSHLRQVPVDGVKIDKSFIADLQRDPDDLALTTAIINMAHSLGI
CCCEEEEHHCCCCHHHHHHHHHCCCCCEEECHHHHHHHHCCCHHHHHHHHHHHHHHHCCH
TVVAEGIEQEAQFNLLRERGCDLGQGYWFSRPLSPTDMVKLIAAG
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]