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The map label for this gene is cycL [H]

Identifier: 21243065

GI number: 21243065

Start: 2723241

End: 2723675

Strand: Direct

Name: cycL [H]

Synonym: XAC2330

Alternate gene names: 21243065

Gene position: 2723241-2723675 (Clockwise)

Preceding gene: 21243064

Following gene: 21243066

Centisome position: 52.62

GC content: 68.05

Gene sequence:

>435_bases
ATGACGCGCGCCTGGCTGCTGACGCTGCTGTTGCTGCCCTGGCTGGCATTCGCCCAGCCGGTCGGCGATCCGGCGCCGCT
GCGCTATGCATCGGCCGAAGAGGAGGCGCGTTTTCACGCGCTTACCGCCGAGTTGCGCTGCGTGCAATGCCAGAACCAGT
CGCTGGCCGATTCCAACGCGCAGATTGCGCAGGATCTGCGCCGCGAGGTGCTGGCGCTGATGCACCAAGGTCGCAGCGAT
GCGCAGATCCGCCAGTTTCTGGTCGCGCGCTATGGCGAGTTCGTGCTGTACCGCCCGCGCGTGGAGTCGCGCACCTGGCT
GCTATGGTTCGGCCCGCTGCTGGTGTTGCTGCTGGGCGCGGGCGCCGTGGCGCAGATAGTACGCAAACGCAGCGTGGCCG
CGCCTACCGCGCCTGCCGATGAGCAGGAGTGGTGA

Upstream 100 bases:

>100_bases
GCGGCATGCTGACCCAATCCATCATCGACACCCAGTTGATTCCGGCGCTGAGCCAGATCGAACGTTCCCCCACCGCCGCA
CCGGACCTGCACGCCAAACA

Downstream 100 bases:

>100_bases
TGGCCGGCTTTGTCATCGCGGGGCTCGTGATTGCGCTGCTGGCGCTCGGCCTGGTGTTGCGCCCGCTGTGGCGCGACGCG
CGCGGCCTGGCTGCGAGCGT

Product: C-type cytochrome biogenesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MTRAWLLTLLLLPWLAFAQPVGDPAPLRYASAEEEARFHALTAELRCVQCQNQSLADSNAQIAQDLRREVLALMHQGRSD
AQIRQFLVARYGEFVLYRPRVESRTWLLWFGPLLVLLLGAGAVAQIVRKRSVAAPTAPADEQEW

Sequences:

>Translated_144_residues
MTRAWLLTLLLLPWLAFAQPVGDPAPLRYASAEEEARFHALTAELRCVQCQNQSLADSNAQIAQDLRREVLALMHQGRSD
AQIRQFLVARYGEFVLYRPRVESRTWLLWFGPLLVLLLGAGAVAQIVRKRSVAAPTAPADEQEW
>Mature_143_residues
TRAWLLTLLLLPWLAFAQPVGDPAPLRYASAEEEARFHALTAELRCVQCQNQSLADSNAQIAQDLRREVLALMHQGRSDA
QIRQFLVARYGEFVLYRPRVESRTWLLWFGPLLVLLLGAGAVAQIVRKRSVAAPTAPADEQEW

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=94, Percent_Identity=45.7446808510638, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1790512, Length=65, Percent_Identity=38.4615384615385, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16252; Mature: 16121

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRAWLLTLLLLPWLAFAQPVGDPAPLRYASAEEEARFHALTAELRCVQCQNQSLADSNA
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QIAQDLRREVLALMHQGRSDAQIRQFLVARYGEFVLYRPRVESRTWLLWFGPLLVLLLGA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCC
GAVAQIVRKRSVAAPTAPADEQEW
CHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
TRAWLLTLLLLPWLAFAQPVGDPAPLRYASAEEEARFHALTAELRCVQCQNQSLADSNA
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCH
QIAQDLRREVLALMHQGRSDAQIRQFLVARYGEFVLYRPRVESRTWLLWFGPLLVLLLGA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCC
GAVAQIVRKRSVAAPTAPADEQEW
CHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]