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The map label for this gene is fecI [C]

Identifier: 21242926

GI number: 21242926

Start: 2564057

End: 2564632

Strand: Direct

Name: fecI [C]

Synonym: XAC2191

Alternate gene names: 21242926

Gene position: 2564057-2564632 (Clockwise)

Preceding gene: 21242924

Following gene: 21242927

Centisome position: 49.54

GC content: 63.72

Gene sequence:

>576_bases
ATGTCCAGCGCCGTCGACGAATGGTTTGTCCAGCACATCCTCATCCACGAGACCGCCCTGGTCGCTTATCTGAGGCGATG
CTGGCCCAACCCCGATGACGTTCACGATCTCCGCCAGGAGGTCTATGCGCGTGTCTACGAGTCGGCCAGCCGCCAGCTTC
CCGACATCCCCCGGGCATTCCTTTTCAGCACCGCCAATCACTTGGTCACCGATCGCATCCGGCGCAGCCGGGTGGTCTCC
ATCGAAGCAGTGGGTGATCCGGACGCCCTGCTCGTCTTAGTGGAGGAGTGCACCCCGGAACGCTGGATGGGAGGGCGCCA
GTTGCTCGCCCGCCTGACCCATGCCTTCGATCGGTTGCCGGACCGCTGCCGCGAAGTGGTGTGGCTGCGCCGTGTGCAGG
AACTGTCGCAGAAGGAGGTCGCCGTGCATCTGGGTATCAGCGAAAAAACCGTCGAGAAACACATGGCCAAGGGCATACGC
CTGCTGGCCGATTATTTCCACGGCTCGGCGGCTCCACCGCTTGCGGCGCCCGCCACGGCACTCAAGTCGACGCGCGATGG
ACAGCAGGCAGATTGA

Upstream 100 bases:

>100_bases
CGCCCTAGCGACCAGCGTCGAACGAGCGCGCCATTTCCCTACCCTCCATCGGTGCGCGGACGGTGCTGCCAAGCGCAGCC
GTTTGGGCTAATCTGGCCGA

Downstream 100 bases:

>100_bases
GCACGCCGCCGCGCAGTGGCTGGCGCGGCGCGAGAGCGAGCCGTGGGATGCGAGCGACCAGCTGCAACTCGACGCCTGGC
TGGCGCAGTCCACGGCACAC

Product: two-component system regulatory protein

Products: NA

Alternate protein names: RNA Polymerase Sigma Factor; RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma Factor FecI; RNA Polymerase Sigma-70 Factor FecI; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Two-Component System Regulatory Protein; FecI-Like Sigma-; ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor Protein; Transcriptional Regulator Xre Family; RNA Polymerase Sigma-70 Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor FecI Family

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MSSAVDEWFVQHILIHETALVAYLRRCWPNPDDVHDLRQEVYARVYESASRQLPDIPRAFLFSTANHLVTDRIRRSRVVS
IEAVGDPDALLVLVEECTPERWMGGRQLLARLTHAFDRLPDRCREVVWLRRVQELSQKEVAVHLGISEKTVEKHMAKGIR
LLADYFHGSAAPPLAAPATALKSTRDGQQAD

Sequences:

>Translated_191_residues
MSSAVDEWFVQHILIHETALVAYLRRCWPNPDDVHDLRQEVYARVYESASRQLPDIPRAFLFSTANHLVTDRIRRSRVVS
IEAVGDPDALLVLVEECTPERWMGGRQLLARLTHAFDRLPDRCREVVWLRRVQELSQKEVAVHLGISEKTVEKHMAKGIR
LLADYFHGSAAPPLAAPATALKSTRDGQQAD
>Mature_190_residues
SSAVDEWFVQHILIHETALVAYLRRCWPNPDDVHDLRQEVYARVYESASRQLPDIPRAFLFSTANHLVTDRIRRSRVVSI
EAVGDPDALLVLVEECTPERWMGGRQLLARLTHAFDRLPDRCREVVWLRRVQELSQKEVAVHLGISEKTVEKHMAKGIRL
LADYFHGSAAPPLAAPATALKSTRDGQQAD

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21727; Mature: 21596

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSAVDEWFVQHILIHETALVAYLRRCWPNPDDVHDLRQEVYARVYESASRQLPDIPRAF
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LFSTANHLVTDRIRRSRVVSIEAVGDPDALLVLVEECTPERWMGGRQLLARLTHAFDRLP
HHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHH
DRCREVVWLRRVQELSQKEVAVHLGISEKTVEKHMAKGIRLLADYFHGSAAPPLAAPATA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LKSTRDGQQAD
HHHCCCCCCCC
>Mature Secondary Structure 
SSAVDEWFVQHILIHETALVAYLRRCWPNPDDVHDLRQEVYARVYESASRQLPDIPRAF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LFSTANHLVTDRIRRSRVVSIEAVGDPDALLVLVEECTPERWMGGRQLLARLTHAFDRLP
HHHHHHHHHHHHHHHHHEEEEEECCCCHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHH
DRCREVVWLRRVQELSQKEVAVHLGISEKTVEKHMAKGIRLLADYFHGSAAPPLAAPATA
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LKSTRDGQQAD
HHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA