| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is czcB [H]
Identifier: 21242881
GI number: 21242881
Start: 2502758
End: 2504008
Strand: Direct
Name: czcB [H]
Synonym: XAC2145
Alternate gene names: 21242881
Gene position: 2502758-2504008 (Clockwise)
Preceding gene: 21242879
Following gene: 21242882
Centisome position: 48.36
GC content: 67.55
Gene sequence:
>1251_bases ATGGGTGCCAGGCGATGCCGATGGACGCCGCTGCCGGCAGCGAGCGTAGATCCCTCGCCGATGCAACCGCGCCCTGCGTT CGCGCATCGCCGACCGCGGGTGCAAGGCCTTCCCTCTCCCCGTTCGAGTCATCGCATGCCGTCCCCCTTCCCGCGTTCTA CGCTGGCAGCTGCCTGTGTGTGCAGCTTGCTCGCTGGCTGCGGAGCAACGCCGCCGCCGGCCGCTCCCTCGCCGCTGCTG ATCCACACCAACATGCAGGTGATGGTGCCGGCGCACTCGCCCTTGCGTGCCAGCCTGCGCGTGCAGGCGGTGCGCAGCCA ACCCATCGCACCGCTGCTGCAGATGCCGGCCGTGATCGAGGTCTTGCCCGAGCGGCTGGTGCGGGTCGTGCCGCCGTTGG CCGGGCGCGTGGTCGCACTGCCCAAGACCCTGGGCGACACCGTGCGTGCTGGCGATGTGCTGTGCGTGCTGGATTCTGCC GAACTTGCCAGTGCCTACAGCGATGCCGGCAAGGCGCGCGCCACGCTGGAACAGGCACGTCTGGAACTTGCCCGGCAGAA GGCGCTGGCAGCGGACAGCATTTCCGCTGCACGCGATCTGCAGGCAGCGCAGCAGGCCTTCGACAGCGCGCAGAACGATG CACGGGCGGCCAGCGATCGCCTGGCCCAGCTGGGTGTTGCTGCGCAGGCGAGCTCGCACCGGCGCTATGTCGTGCGTGCG CCCATTGCAGGCCGCTTGGTGGACCTGAGCGCTGCGCTGGGCGGCTTCTGGAACGACACGTCAGCGTCACTGATGACGGT GGCCGATATCTCGCAGGTGTGGCTCACCGCCAGCGTGCCGGAACGCGAGATTGGCCAGGTCTTCGAAGGTCAGCCGGTCA CTGCCAGCCTGGAGGCCTATCCAGCCCAACGCTTCGTCGGCCAGGTGCAACACCTGGATGATTTGCTCGACCCCGCCACC CGCACATTGAAAGTCAGGGTGGCCTTAGAGAACCGCGATGGCCTGCTCAAGCCGGGCATGTTTGCGCGCGCCCAGTTCCA CTCGCGTCCCCGACAGGCCCTGCTGGTGCCCGACAGCGCGCTCTTGCAGATGGGACTGTACACGCGGGTGTTCATCGAAA CCGCGCCGTTCGCTTATCGCTCGCGCATCGTGGCCACCGGCCGCGCGATGGATGGGTATACCGAGATCCTGTCCGGCCTG AAGGCCGGCGAGCGTGTGGTGATCAAGGACGGAGCCTTGCTCAATGATTGA
Upstream 100 bases:
>100_bases CGGCTGGCACCATGCACGCCATCGACGCGGCTGCAGCACGCGTTGCAACTGCCCCAGCCCCGATGGCTGGCGCGCAACCT CACACCTGTGGCGATGCGCC
Downstream 100 bases:
>100_bases GGCGATCACCACCACCTGCTTCCAGCGGCGCGGCATCGTCTGGCTGGTCTTCGTACTCATTGCGTTATACGGCACATGGA GCTGGACGCAGCTGCCGGTG
Product: cation efflux system protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MGARRCRWTPLPAASVDPSPMQPRPAFAHRRPRVQGLPSPRSSHRMPSPFPRSTLAAACVCSLLAGCGATPPPAAPSPLL IHTNMQVMVPAHSPLRASLRVQAVRSQPIAPLLQMPAVIEVLPERLVRVVPPLAGRVVALPKTLGDTVRAGDVLCVLDSA ELASAYSDAGKARATLEQARLELARQKALAADSISAARDLQAAQQAFDSAQNDARAASDRLAQLGVAAQASSHRRYVVRA PIAGRLVDLSAALGGFWNDTSASLMTVADISQVWLTASVPEREIGQVFEGQPVTASLEAYPAQRFVGQVQHLDDLLDPAT RTLKVRVALENRDGLLKPGMFARAQFHSRPRQALLVPDSALLQMGLYTRVFIETAPFAYRSRIVATGRAMDGYTEILSGL KAGERVVIKDGALLND
Sequences:
>Translated_416_residues MGARRCRWTPLPAASVDPSPMQPRPAFAHRRPRVQGLPSPRSSHRMPSPFPRSTLAAACVCSLLAGCGATPPPAAPSPLL IHTNMQVMVPAHSPLRASLRVQAVRSQPIAPLLQMPAVIEVLPERLVRVVPPLAGRVVALPKTLGDTVRAGDVLCVLDSA ELASAYSDAGKARATLEQARLELARQKALAADSISAARDLQAAQQAFDSAQNDARAASDRLAQLGVAAQASSHRRYVVRA PIAGRLVDLSAALGGFWNDTSASLMTVADISQVWLTASVPEREIGQVFEGQPVTASLEAYPAQRFVGQVQHLDDLLDPAT RTLKVRVALENRDGLLKPGMFARAQFHSRPRQALLVPDSALLQMGLYTRVFIETAPFAYRSRIVATGRAMDGYTEILSGL KAGERVVIKDGALLND >Mature_415_residues GARRCRWTPLPAASVDPSPMQPRPAFAHRRPRVQGLPSPRSSHRMPSPFPRSTLAAACVCSLLAGCGATPPPAAPSPLLI HTNMQVMVPAHSPLRASLRVQAVRSQPIAPLLQMPAVIEVLPERLVRVVPPLAGRVVALPKTLGDTVRAGDVLCVLDSAE LASAYSDAGKARATLEQARLELARQKALAADSISAARDLQAAQQAFDSAQNDARAASDRLAQLGVAAQASSHRRYVVRAP IAGRLVDLSAALGGFWNDTSASLMTVADISQVWLTASVPEREIGQVFEGQPVTASLEAYPAQRFVGQVQHLDDLLDPATR TLKVRVALENRDGLLKPGMFARAQFHSRPRQALLVPDSALLQMGLYTRVFIETAPFAYRSRIVATGRAMDGYTEILSGLK AGERVVIKDGALLND
Specific function: CzcA and CzcB together would act in zinc efflux nearly as effectively as the complete czc efflux system (CzcABC). The CzcB protein is thought to funnel zinc cations to the CzcA transport protein [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]
Homologues:
Organism=Escherichia coli, GI87082036, Length=337, Percent_Identity=28.486646884273, Blast_Score=79, Evalue=6e-16, Organism=Escherichia coli, GI1786787, Length=186, Percent_Identity=32.258064516129, Blast_Score=76, Evalue=4e-15, Organism=Escherichia coli, GI1789929, Length=307, Percent_Identity=26.3843648208469, Blast_Score=74, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005695 - InterPro: IPR006143 [H]
Pfam domain/function: PF00529 HlyD [H]
EC number: NA
Molecular weight: Translated: 44540; Mature: 44409
Theoretical pI: Translated: 10.50; Mature: 10.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGARRCRWTPLPAASVDPSPMQPRPAFAHRRPRVQGLPSPRSSHRMPSPFPRSTLAAACV CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH CSLLAGCGATPPPAAPSPLLIHTNMQVMVPAHSPLRASLRVQAVRSQPIAPLLQMPAVIE HHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHH VLPERLVRVVPPLAGRVVALPKTLGDTVRAGDVLCVLDSAELASAYSDAGKARATLEQAR HHHHHHHHHCCCCCCCEEECCHHHCCHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH LELARQKALAADSISAARDLQAAQQAFDSAQNDARAASDRLAQLGVAAQASSHRRYVVRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC PIAGRLVDLSAALGGFWNDTSASLMTVADISQVWLTASVPEREIGQVFEGQPVTASLEAY CCCCHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHEECCCCHHHHHHHHCCCCCEEHHHHC PAQRFVGQVQHLDDLLDPATRTLKVRVALENRDGLLKPGMFARAQFHSRPRQALLVPDSA CHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCHH LLQMGLYTRVFIETAPFAYRSRIVATGRAMDGYTEILSGLKAGERVVIKDGALLND HHHHHHHHEEEHCCCCHHHHHHHEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC >Mature Secondary Structure GARRCRWTPLPAASVDPSPMQPRPAFAHRRPRVQGLPSPRSSHRMPSPFPRSTLAAACV CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH CSLLAGCGATPPPAAPSPLLIHTNMQVMVPAHSPLRASLRVQAVRSQPIAPLLQMPAVIE HHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHH VLPERLVRVVPPLAGRVVALPKTLGDTVRAGDVLCVLDSAELASAYSDAGKARATLEQAR HHHHHHHHHCCCCCCCEEECCHHHCCHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH LELARQKALAADSISAARDLQAAQQAFDSAQNDARAASDRLAQLGVAAQASSHRRYVVRA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC PIAGRLVDLSAALGGFWNDTSASLMTVADISQVWLTASVPEREIGQVFEGQPVTASLEAY CCCCHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHEECCCCHHHHHHHHCCCCCEEHHHHC PAQRFVGQVQHLDDLLDPATRTLKVRVALENRDGLLKPGMFARAQFHSRPRQALLVPDSA CHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCEEECCCHH LLQMGLYTRVFIETAPFAYRSRIVATGRAMDGYTEILSGLKAGERVVIKDGALLND HHHHHHHHEEEHCCCCHHHHHHHEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8829543 [H]