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The map label for this gene is rci [H]

Identifier: 21242839

GI number: 21242839

Start: 2458014

End: 2458607

Strand: Reverse

Name: rci [H]

Synonym: XAC2103

Alternate gene names: 21242839

Gene position: 2458607-2458014 (Counterclockwise)

Preceding gene: 21242841

Following gene: 21242838

Centisome position: 47.5

GC content: 57.74

Gene sequence:

>594_bases
GTGGGCGATTTCGTACCTTCTACAGAAGTTCGAAAGCGCACTGTCGGCGATGCCATTGATCGCTACCTAGAAGTGACACT
GCCTGCCAAGCGTCAAAAGGATGCAGCCAAGCAAGTTCAGATGCTGGCTTGGTGGAAAGCTGAAATCGGCGATGTGCCGC
TTGTTGGATTGACTCCCGCCAAGATTGCCGCAATCCGCTGGCTGACCAAGAACCCAGTACCCAACGTCACCCGCATGCAG
GAGAGTAAGGGACGCGAGCGGTTTCTTAGCGAGCCGGAGCGATTGGCGCTGTTGGCAGCATGCGACGCGTCGGATTGCGC
TCCCCTCGCCCCTTTGGTCCGGCTGGCGTTGGCTACCGGTGCAAGGCGTGGAGAGCTACTAGGACTGCAATGGGAACACG
TGGACCTTGACAGGCGTACCGCGCGCTTCATCGACACCAAGAATGGAGAGAACAGGACGGTTCCGTTAGCTACCGGTGTT
ACGCAAATGCTTCAGGCCATGGCTCGCACAACCGGTCCAATCTTTCCGATCACTGGTCCTATGCTCGATAAGCCATGGCG
CGCAGCGTGTGTGTCGGCGGGATTAGGTGATTGA

Upstream 100 bases:

>100_bases
CGTGCGCGTGCGGCGGCAGTCCGGCCCATGGCTCACGAAATCGTTTGATCGGAAGGCAGACGCACAAGAGTGGGCACGCG
GTATCGAACACAAATTAGAC

Downstream 100 bases:

>100_bases
TACGCCCAGGATTTCCTAGACATCTCAAGGCCATGGAAAATGGCTGATTCGGAGGTGTCCATGAGCAGTAAGCGGTATAC
GGATGAGTTCAAGATCGAGG

Product: DNA recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MGDFVPSTEVRKRTVGDAIDRYLEVTLPAKRQKDAAKQVQMLAWWKAEIGDVPLVGLTPAKIAAIRWLTKNPVPNVTRMQ
ESKGRERFLSEPERLALLAACDASDCAPLAPLVRLALATGARRGELLGLQWEHVDLDRRTARFIDTKNGENRTVPLATGV
TQMLQAMARTTGPIFPITGPMLDKPWRAACVSAGLGD

Sequences:

>Translated_197_residues
MGDFVPSTEVRKRTVGDAIDRYLEVTLPAKRQKDAAKQVQMLAWWKAEIGDVPLVGLTPAKIAAIRWLTKNPVPNVTRMQ
ESKGRERFLSEPERLALLAACDASDCAPLAPLVRLALATGARRGELLGLQWEHVDLDRRTARFIDTKNGENRTVPLATGV
TQMLQAMARTTGPIFPITGPMLDKPWRAACVSAGLGD
>Mature_196_residues
GDFVPSTEVRKRTVGDAIDRYLEVTLPAKRQKDAAKQVQMLAWWKAEIGDVPLVGLTPAKIAAIRWLTKNPVPNVTRMQE
SKGRERFLSEPERLALLAACDASDCAPLAPLVRLALATGARRGELLGLQWEHVDLDRRTARFIDTKNGENRTVPLATGVT
QMLQAMARTTGPIFPITGPMLDKPWRAACVSAGLGD

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 21610; Mature: 21479

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDFVPSTEVRKRTVGDAIDRYLEVTLPAKRQKDAAKQVQMLAWWKAEIGDVPLVGLTPA
CCCCCCCHHHHHHHHHHHHHHHHECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCHH
KIAAIRWLTKNPVPNVTRMQESKGRERFLSEPERLALLAACDASDCAPLAPLVRLALATG
HHHHHHHHHCCCCCCHHHHHHHCCHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHHHHHC
ARRGELLGLQWEHVDLDRRTARFIDTKNGENRTVPLATGVTQMLQAMARTTGPIFPITGP
CCCCCEECCEEEECCCCHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCC
MLDKPWRAACVSAGLGD
CCCCCHHHHHHHCCCCC
>Mature Secondary Structure 
GDFVPSTEVRKRTVGDAIDRYLEVTLPAKRQKDAAKQVQMLAWWKAEIGDVPLVGLTPA
CCCCCCHHHHHHHHHHHHHHHHECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCHH
KIAAIRWLTKNPVPNVTRMQESKGRERFLSEPERLALLAACDASDCAPLAPLVRLALATG
HHHHHHHHHCCCCCCHHHHHHHCCHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHHHHHC
ARRGELLGLQWEHVDLDRRTARFIDTKNGENRTVPLATGVTQMLQAMARTTGPIFPITGP
CCCCCEECCEEEECCCCHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCC
MLDKPWRAACVSAGLGD
CCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]