| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is eda [H]
Identifier: 21242806
GI number: 21242806
Start: 2414905
End: 2415564
Strand: Reverse
Name: eda [H]
Synonym: XAC2067
Alternate gene names: 21242806
Gene position: 2415564-2414905 (Counterclockwise)
Preceding gene: 21242807
Following gene: 21242802
Centisome position: 46.67
GC content: 68.94
Gene sequence:
>660_bases ATGACGATTGCCCAGACCCAGAACACCGCCGAACAGTTGCTGCGCGATGCCGGCATCCTGCCGGTGGTCACCGTGGACAC GCTGGACCAGGCGCGCCGCGTCGCCGATGCGCTGCTCGAAGGCGGCCTGCCCGCGATCGAGCTGACCCTGCGCACGCCGG TTGCGATCGACGCGCTGGCGATGCTCAAGCGCGAGTTGCCCAACATCGTGATCGGCGCGGGCACCGTGCTGAGCGAATTG CAGCTGCGTCAGTCGGTGGATGCCGGTGCAGACTTCCTGGTGACCCCGGGCACGCCCGCGCCGCTGGCGCGCCTGCTGGC CGACGCACCGATTCCCGCCGTACCTGGCGCAGCAACGCCGACCGAGCTGCTGACCCTGATGGGCCTGGGATTCCGCGTCT GCAAGCTGTTCCCGGCCACCGCCGTGGGCGGTCTGCAGATGCTCAAGGGCCTGGCTGGCCCGTTGTCCGAGCTCAAACTG TGCCCCACCGGCGGCATCAGCGAGTCCAACGCGGCCGAGTTCCTGTCGCAGCCGAATGTGCTGTGCATCGGCGGTTCGTG GATGGTCCCCAAGGACTGGCTGGCGCAGGGCCAATGGGACAAGGTCAAGGAAAGTTCGGCCAAGGCGGCGGCGATCGTGC GGCAGGTGCGGGCGGGCTGA
Upstream 100 bases:
>100_bases GCCGATGCCGCAGCCGCCGCGGCACCGCACGAGTCCAAGGACGCCTGATCCCCTTCCCTCTCTGCGACCGCTCCGTTGGT CGCCGTCACCCGGAGTTGCA
Downstream 100 bases:
>100_bases TTGGCTGGGCGCCATATCCGGCAGGTCGATCGTTGGATGGCTTCGAATCTGCATGTCGATACAGATGTGCTGATTCGCCG ATGACGGCATGAAGATCGAG
Product: keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase
Products: NA
Alternate protein names: 4-hydroxy-2-oxoglutarate aldolase; 2-keto-4-hydroxyglutarate aldolase; KHG-aldolase; 2-dehydro-3-deoxy-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG-aldolase; Phospho-2-dehydro-3-deoxygluconate aldolase; Phospho-2-keto-3-deoxygluconate aldolase [H]
Number of amino acids: Translated: 219; Mature: 218
Protein sequence:
>219_residues MTIAQTQNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPVAIDALAMLKRELPNIVIGAGTVLSEL QLRQSVDAGADFLVTPGTPAPLARLLADAPIPAVPGAATPTELLTLMGLGFRVCKLFPATAVGGLQMLKGLAGPLSELKL CPTGGISESNAAEFLSQPNVLCIGGSWMVPKDWLAQGQWDKVKESSAKAAAIVRQVRAG
Sequences:
>Translated_219_residues MTIAQTQNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPVAIDALAMLKRELPNIVIGAGTVLSEL QLRQSVDAGADFLVTPGTPAPLARLLADAPIPAVPGAATPTELLTLMGLGFRVCKLFPATAVGGLQMLKGLAGPLSELKL CPTGGISESNAAEFLSQPNVLCIGGSWMVPKDWLAQGQWDKVKESSAKAAAIVRQVRAG >Mature_218_residues TIAQTQNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPVAIDALAMLKRELPNIVIGAGTVLSELQ LRQSVDAGADFLVTPGTPAPLARLLADAPIPAVPGAATPTELLTLMGLGFRVCKLFPATAVGGLQMLKGLAGPLSELKLC PTGGISESNAAEFLSQPNVLCIGGSWMVPKDWLAQGQWDKVKESSAKAAAIVRQVRAG
Specific function: KEY ENZYME IN THE ENTNER-DOUDOROFF PATHWAY. PARTICIPATES IN THE REGULATION OF THE INTRACELLULAR LEVEL OF GLYOXYLATE. [C]
COG id: COG0800
COG function: function code G; 2-keto-3-deoxy-6-phosphogluconate aldolase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the KHG/KDPG aldolase family [H]
Homologues:
Organism=Escherichia coli, GI1788156, Length=203, Percent_Identity=41.3793103448276, Blast_Score=165, Evalue=3e-42, Organism=Escherichia coli, GI48994954, Length=200, Percent_Identity=29, Blast_Score=64, Evalue=6e-12,
Paralogues:
None
Copy number: 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000887 - InterPro: IPR013785 [H]
Pfam domain/function: PF01081 Aldolase [H]
EC number: =4.1.3.16; =4.1.2.14 [H]
Molecular weight: Translated: 22776; Mature: 22645
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS00159 ALDOLASE_KDPG_KHG_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIAQTQNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPVAIDALA CCCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH MLKRELPNIVIGAGTVLSELQLRQSVDAGADFLVTPGTPAPLARLLADAPIPAVPGAATP HHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCH TELLTLMGLGFRVCKLFPATAVGGLQMLKGLAGPLSELKLCPTGGISESNAAEFLSQPNV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEECCCCCCCCCHHHHHHCCCCE LCIGGSWMVPKDWLAQGQWDKVKESSAKAAAIVRQVRAG EEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TIAQTQNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPVAIDALA CCCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHH MLKRELPNIVIGAGTVLSELQLRQSVDAGADFLVTPGTPAPLARLLADAPIPAVPGAATP HHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHCCCCCCCCCCCCH TELLTLMGLGFRVCKLFPATAVGGLQMLKGLAGPLSELKLCPTGGISESNAAEFLSQPNV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCEECCCCCCCCCHHHHHHCCCCE LCIGGSWMVPKDWLAQGQWDKVKESSAKAAAIVRQVRAG EEECCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8145647 [H]