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The map label for this gene is clpS

Identifier: 21242744

GI number: 21242744

Start: 2335121

End: 2335441

Strand: Direct

Name: clpS

Synonym: XAC2000

Alternate gene names: 21242744

Gene position: 2335121-2335441 (Clockwise)

Preceding gene: 77748625

Following gene: 21242745

Centisome position: 45.12

GC content: 61.99

Gene sequence:

>321_bases
ATGCCTCGGAATACCTCACACGAACACGACCACGGCCTGATGGTCGAAGCCAGCAAGCCCGAAGTGGCGCCACCGCCGCG
CTACCAGGTGCTGTTGCTGAACGACGACTACACCCCGATGGACTTCGTGGTGACCGTCCTGGAGCAGTTTTTCAACCTGA
ACCTGGAGCAGGCCACGCAGATCATGCTGCACGTCCACACCCGCGGGCGCGGCGTGTGCGGGGTCTACAGCCGTGAGGTT
GCAGAGTCGAAGGTGGCCCAGGTCAACGAATTTTCGCGCATGAACCAGCACCCGCTGCTGTGCACGATGGAACAGGCCTG
A

Upstream 100 bases:

>100_bases
GAATCGGTCATCAAGGGCCAGCCAGGAAATTGGACACAAATTGTGCGGGGCACAGCGCAAATCGTCCAATGCATGCAAGG
TTGAACCGTATAATGGCCGG

Downstream 100 bases:

>100_bases
GACGCGCTGTAGATCATTCCAGCAGCGCAACAGTGTGGCTGCGATCACGTGCTAACGCTGTCTGAACATGCCTATCCGAT
AGGGTTGTGGAAAATCCCAA

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MPRNTSHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQIMLHVHTRGRGVCGVYSREV
AESKVAQVNEFSRMNQHPLLCTMEQA

Sequences:

>Translated_106_residues
MPRNTSHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQIMLHVHTRGRGVCGVYSREV
AESKVAQVNEFSRMNQHPLLCTMEQA
>Mature_105_residues
PRNTSHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQIMLHVHTRGRGVCGVYSREVA
ESKVAQVNEFSRMNQHPLLCTMEQA

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=91, Percent_Identity=54.9450549450549, Blast_Score=122, Evalue=4e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_XANAC (Q8PL06)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_642326.1
- ProteinModelPortal:   Q8PL06
- SMR:   Q8PL06
- GeneID:   1156071
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC2000
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- ProtClustDB:   PRK00033
- BioCyc:   XAXO190486:XAC2000-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 12121; Mature: 11990

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRNTSHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQ
CCCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHE
IMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQA
EEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC
>Mature Secondary Structure 
PRNTSHEHDHGLMVEASKPEVAPPPRYQVLLLNDDYTPMDFVVTVLEQFFNLNLEQATQ
CCCCCCCCCCCEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHE
IMLHVHTRGRGVCGVYSREVAESKVAQVNEFSRMNQHPLLCTMEQA
EEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12024217