Click here to switch to the map view.

The map label for this gene is flgH

Identifier: 21242724

GI number: 21242724

Start: 2312732

End: 2313424

Strand: Reverse

Name: flgH

Synonym: XAC1980

Alternate gene names: 21242724

Gene position: 2313424-2312732 (Counterclockwise)

Preceding gene: 21242725

Following gene: 21242723

Centisome position: 44.7

GC content: 67.97

Gene sequence:

>693_bases
ATGTCACGCCTGCCTTCTCTCTCCCGCCCGTGCCTCGCCATTGCCTGCAGCGCGCTGCTGGGTGGCTGCGTGGCCGCCGG
CGATGTACGTCCGTTCGCCGAAATGGCGCCGATTGTGCCGGTCGTGGCACCGGTGGCGCAGCCGACGGCCGGTGCGATCT
ACGCCGCCGGCCCCGGCCTGAACCTGTATGGCGATCGCCGTGCCCGCGATGTCGGCGATCTGCTGACGGTGAACCTGGTC
GAAAGCACCACCGCCTCGTCCACCGCCAACACCAGCATCAGCAAGAAGGACGCCACCACTATGGCCGCGCCGACCTTGCT
GGGCGCGCCGCTCACCGTCGGTGGCTTGAACGTGCTTGAGAACAGCACCAGCGGCGACCGCAGCTTTGCCGGCAAGGGCA
ACACCGCGCAGAGCAACCGCATGCAGGGCAGCGTCACCGTCACCGTGATGCAACGCCTGCCCAACGGCAACCTGGTGATC
CAGGGGCAGAAGAACCTGCGCCTGACCCAGGGCGACGAACTGGTGCAGGTGCAAGGCATCGTGCGCGCCGCCGACATCGC
CCCGGACAACACCGTGCCCTCCAGCAAGGTGGCCGACGCCCGCATCGCTTACGGCGGCCGCGGCGCAATCGCGCAGTCCA
ATGCGATGGGCTGGCTGAGCCGCTTCTTCAATTCCCGTCTGTCGCCCTACTGA

Upstream 100 bases:

>100_bases
TGAATGCCAAGGCCATCTCCACCACCGACTCGATGCTCGGTTACTTGAACAACAACGTCTGATCGGCTCGCCGCTCCTCG
CCCTCTCAGGAATCAACGCC

Downstream 100 bases:

>100_bases
GCCTGCGACCATGAACCTGTCTTCCCTGCCCTTCCGTCTGCTGGCTGCCGCCGTCGCGCTGTGCGCGATTGCCGCGCCGG
CCAGCGCCGAGCGCATCAAG

Product: flagellar basal body L-ring protein

Products: NA

Alternate protein names: Basal body L-ring protein

Number of amino acids: Translated: 230; Mature: 229

Protein sequence:

>230_residues
MSRLPSLSRPCLAIACSALLGGCVAAGDVRPFAEMAPIVPVVAPVAQPTAGAIYAAGPGLNLYGDRRARDVGDLLTVNLV
ESTTASSTANTSISKKDATTMAAPTLLGAPLTVGGLNVLENSTSGDRSFAGKGNTAQSNRMQGSVTVTVMQRLPNGNLVI
QGQKNLRLTQGDELVQVQGIVRAADIAPDNTVPSSKVADARIAYGGRGAIAQSNAMGWLSRFFNSRLSPY

Sequences:

>Translated_230_residues
MSRLPSLSRPCLAIACSALLGGCVAAGDVRPFAEMAPIVPVVAPVAQPTAGAIYAAGPGLNLYGDRRARDVGDLLTVNLV
ESTTASSTANTSISKKDATTMAAPTLLGAPLTVGGLNVLENSTSGDRSFAGKGNTAQSNRMQGSVTVTVMQRLPNGNLVI
QGQKNLRLTQGDELVQVQGIVRAADIAPDNTVPSSKVADARIAYGGRGAIAQSNAMGWLSRFFNSRLSPY
>Mature_229_residues
SRLPSLSRPCLAIACSALLGGCVAAGDVRPFAEMAPIVPVVAPVAQPTAGAIYAAGPGLNLYGDRRARDVGDLLTVNLVE
STTASSTANTSISKKDATTMAAPTLLGAPLTVGGLNVLENSTSGDRSFAGKGNTAQSNRMQGSVTVTVMQRLPNGNLVIQ
GQKNLRLTQGDELVQVQGIVRAADIAPDNTVPSSKVADARIAYGGRGAIAQSNAMGWLSRFFNSRLSPY

Specific function: Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation

COG id: COG2063

COG function: function code N; Flagellar basal body L-ring protein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable). Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgH family

Homologues:

Organism=Escherichia coli, GI1787319, Length=227, Percent_Identity=37.8854625550661, Blast_Score=115, Evalue=3e-27,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGH_XANAC (Q8PL26)

Other databases:

- EMBL:   AE008923
- RefSeq:   NP_642306.1
- GeneID:   1156051
- GenomeReviews:   AE008923_GR
- KEGG:   xac:XAC1980
- NMPDR:   fig|190486.1.peg.1950
- HOGENOM:   HBG507455
- OMA:   CESQAIL
- ProtClustDB:   PRK00249
- BioCyc:   XAXO190486:XAC1980-MONOMER
- HAMAP:   MF_00415
- InterPro:   IPR000527
- PRINTS:   PR01008

Pfam domain/function: PF02107 FlgH

EC number: NA

Molecular weight: Translated: 23683; Mature: 23552

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS51257 PROKAR_LIPOPROTEIN; PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLPSLSRPCLAIACSALLGGCVAAGDVRPFAEMAPIVPVVAPVAQPTAGAIYAAGPGL
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHCCCCCCCCEEEECCCCC
NLYGDRRARDVGDLLTVNLVESTTASSTANTSISKKDATTMAAPTLLGAPLTVGGLNVLE
CCCCCCCHHHHHHEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHC
NSTSGDRSFAGKGNTAQSNRMQGSVTVTVMQRLPNGNLVIQGQKNLRLTQGDELVQVQGI
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCEEEECCCCEEEHHHH
VRAADIAPDNTVPSSKVADARIAYGGRGAIAQSNAMGWLSRFFNSRLSPY
HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SRLPSLSRPCLAIACSALLGGCVAAGDVRPFAEMAPIVPVVAPVAQPTAGAIYAAGPGL
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHCCCCCCCCEEEECCCCC
NLYGDRRARDVGDLLTVNLVESTTASSTANTSISKKDATTMAAPTLLGAPLTVGGLNVLE
CCCCCCCHHHHHHEEEEEEHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHC
NSTSGDRSFAGKGNTAQSNRMQGSVTVTVMQRLPNGNLVIQGQKNLRLTQGDELVQVQGI
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEECCCCEEEECCCCEEEHHHH
VRAADIAPDNTVPSSKVADARIAYGGRGAIAQSNAMGWLSRFFNSRLSPY
HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12024217